Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2432

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2431 and Rru_A2432 are separated by 215 nucleotidesRru_A2432 and Rru_A2433 are separated by 254 nucleotidesRru_A2433 and Rru_A2434 are separated by 57 nucleotides Rru_A2431: Rru_A2431 - Protein of unknown function DUF1078 (NCBI), at 2,829,609 to 2,830,937 _A2431 Rru_A2432: Rru_A2432 - bifunctional sulfur carrier protein/thiazole synthase protein (RefSeq), at 2,831,153 to 2,832,142 _A2432 Rru_A2433: Rru_A2433 - 3-dehydroquinate dehydratase (NCBI), at 2,832,397 to 2,832,846 _A2433 Rru_A2434: Rru_A2434 - Acetyl-CoA biotin carboxyl carrier (NCBI), at 2,832,904 to 2,833,344 _A2434 Position (kb) 2831 2832 2833Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2830.356 kb on - strand, within Rru_A2431at 2830.531 kb on + strand, within Rru_A2431at 2830.531 kb on + strand, within Rru_A2431at 2830.531 kb on + strand, within Rru_A2431at 2830.531 kb on + strand, within Rru_A2431at 2830.532 kb on - strand, within Rru_A2431at 2830.532 kb on - strand, within Rru_A2431at 2830.532 kb on - strand, within Rru_A2431at 2830.556 kb on - strand, within Rru_A2431at 2830.556 kb on - strand, within Rru_A2431at 2830.625 kb on + strand, within Rru_A2431at 2830.627 kb on + strand, within Rru_A2431at 2830.627 kb on + strand, within Rru_A2431at 2830.627 kb on + strand, within Rru_A2431at 2830.628 kb on - strand, within Rru_A2431at 2830.628 kb on - strand, within Rru_A2431at 2830.628 kb on - strand, within Rru_A2431at 2830.628 kb on - strand, within Rru_A2431at 2830.628 kb on - strand, within Rru_A2431at 2830.628 kb on - strand, within Rru_A2431at 2830.762 kb on - strand, within Rru_A2431at 2830.910 kb on + strandat 2830.910 kb on + strandat 2830.911 kb on - strandat 2831.020 kb on - strandat 2831.020 kb on - strandat 2831.034 kb on - strandat 2832.340 kb on + strandat 2832.340 kb on + strandat 2832.340 kb on + strandat 2832.340 kb on + strandat 2832.340 kb on + strandat 2832.340 kb on + strandat 2832.342 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,830,356 - Rru_A2431 0.56 -0.6
2,830,531 + Rru_A2431 0.69 -2.1
2,830,531 + Rru_A2431 0.69 -0.4
2,830,531 + Rru_A2431 0.69 -2.8
2,830,531 + Rru_A2431 0.69 -3.9
2,830,532 - Rru_A2431 0.69 -0.2
2,830,532 - Rru_A2431 0.69 +1.2
2,830,532 - Rru_A2431 0.69 -1.4
2,830,556 - Rru_A2431 0.71 -0.3
2,830,556 - Rru_A2431 0.71 -1.3
2,830,625 + Rru_A2431 0.76 +0.2
2,830,627 + Rru_A2431 0.77 +0.3
2,830,627 + Rru_A2431 0.77 -2.2
2,830,627 + Rru_A2431 0.77 +1.0
2,830,628 - Rru_A2431 0.77 -0.1
2,830,628 - Rru_A2431 0.77 -1.9
2,830,628 - Rru_A2431 0.77 -2.1
2,830,628 - Rru_A2431 0.77 -1.4
2,830,628 - Rru_A2431 0.77 +0.5
2,830,628 - Rru_A2431 0.77 -2.3
2,830,762 - Rru_A2431 0.87 -3.9
2,830,910 + -3.3
2,830,910 + -0.6
2,830,911 - -1.3
2,831,020 - +0.8
2,831,020 - -0.1
2,831,034 - -0.9
2,832,340 + -1.1
2,832,340 + -0.9
2,832,340 + -1.5
2,832,340 + -2.3
2,832,340 + -1.4
2,832,340 + -0.1
2,832,342 + -0.4

Or see this region's nucleotide sequence