Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2431 and Rru_A2432 are separated by 215 nucleotides Rru_A2432 and Rru_A2433 are separated by 254 nucleotides Rru_A2433 and Rru_A2434 are separated by 57 nucleotides
Rru_A2431: Rru_A2431 - Protein of unknown function DUF1078 (NCBI), at 2,829,609 to 2,830,937
_A2431
Rru_A2432: Rru_A2432 - bifunctional sulfur carrier protein/thiazole synthase protein (RefSeq), at 2,831,153 to 2,832,142
_A2432
Rru_A2433: Rru_A2433 - 3-dehydroquinate dehydratase (NCBI), at 2,832,397 to 2,832,846
_A2433
Rru_A2434: Rru_A2434 - Acetyl-CoA biotin carboxyl carrier (NCBI), at 2,832,904 to 2,833,344
_A2434
Position (kb)
2831
2832
2833 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2830.356 kb on - strand, within Rru_A2431 at 2830.531 kb on + strand, within Rru_A2431 at 2830.531 kb on + strand, within Rru_A2431 at 2830.531 kb on + strand, within Rru_A2431 at 2830.531 kb on + strand, within Rru_A2431 at 2830.532 kb on - strand, within Rru_A2431 at 2830.532 kb on - strand, within Rru_A2431 at 2830.532 kb on - strand, within Rru_A2431 at 2830.556 kb on - strand, within Rru_A2431 at 2830.556 kb on - strand, within Rru_A2431 at 2830.625 kb on + strand, within Rru_A2431 at 2830.627 kb on + strand, within Rru_A2431 at 2830.627 kb on + strand, within Rru_A2431 at 2830.627 kb on + strand, within Rru_A2431 at 2830.628 kb on - strand, within Rru_A2431 at 2830.628 kb on - strand, within Rru_A2431 at 2830.628 kb on - strand, within Rru_A2431 at 2830.628 kb on - strand, within Rru_A2431 at 2830.628 kb on - strand, within Rru_A2431 at 2830.628 kb on - strand, within Rru_A2431 at 2830.762 kb on - strand, within Rru_A2431 at 2830.910 kb on + strand at 2830.910 kb on + strand at 2830.911 kb on - strand at 2831.020 kb on - strand at 2831.020 kb on - strand at 2831.034 kb on - strand at 2832.340 kb on + strand at 2832.340 kb on + strand at 2832.340 kb on + strand at 2832.340 kb on + strand at 2832.340 kb on + strand at 2832.340 kb on + strand at 2832.342 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 2,830,356 - Rru_A2431 0.56 -0.6 2,830,531 + Rru_A2431 0.69 -2.1 2,830,531 + Rru_A2431 0.69 -0.4 2,830,531 + Rru_A2431 0.69 -2.8 2,830,531 + Rru_A2431 0.69 -3.9 2,830,532 - Rru_A2431 0.69 -0.2 2,830,532 - Rru_A2431 0.69 +1.2 2,830,532 - Rru_A2431 0.69 -1.4 2,830,556 - Rru_A2431 0.71 -0.3 2,830,556 - Rru_A2431 0.71 -1.3 2,830,625 + Rru_A2431 0.76 +0.2 2,830,627 + Rru_A2431 0.77 +0.3 2,830,627 + Rru_A2431 0.77 -2.2 2,830,627 + Rru_A2431 0.77 +1.0 2,830,628 - Rru_A2431 0.77 -0.1 2,830,628 - Rru_A2431 0.77 -1.9 2,830,628 - Rru_A2431 0.77 -2.1 2,830,628 - Rru_A2431 0.77 -1.4 2,830,628 - Rru_A2431 0.77 +0.5 2,830,628 - Rru_A2431 0.77 -2.3 2,830,762 - Rru_A2431 0.87 -3.9 2,830,910 + -3.3 2,830,910 + -0.6 2,830,911 - -1.3 2,831,020 - +0.8 2,831,020 - -0.1 2,831,034 - -0.9 2,832,340 + -1.1 2,832,340 + -0.9 2,832,340 + -1.5 2,832,340 + -2.3 2,832,340 + -1.4 2,832,340 + -0.1 2,832,342 + -0.4
Or see this region's nucleotide sequence