Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2341

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2340 and Rru_A2341 are separated by 437 nucleotidesRru_A2341 and Rru_A2342 are separated by 28 nucleotides Rru_A2340: Rru_A2340 - ABC transporter, transmembrane region (NCBI), at 2,712,302 to 2,714,113 _A2340 Rru_A2341: Rru_A2341 - hypothetical protein (NCBI), at 2,714,551 to 2,714,949 _A2341 Rru_A2342: Rru_A2342 - hypothetical protein (NCBI), at 2,714,978 to 2,715,835 _A2342 Position (kb) 2714 2715Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2713.584 kb on + strand, within Rru_A2340at 2713.585 kb on - strand, within Rru_A2340at 2713.585 kb on - strand, within Rru_A2340at 2713.585 kb on - strand, within Rru_A2340at 2713.596 kb on + strand, within Rru_A2340at 2713.596 kb on + strand, within Rru_A2340at 2713.597 kb on - strand, within Rru_A2340at 2713.597 kb on - strand, within Rru_A2340at 2713.653 kb on + strand, within Rru_A2340at 2713.653 kb on + strand, within Rru_A2340at 2713.653 kb on + strand, within Rru_A2340at 2713.654 kb on - strand, within Rru_A2340at 2713.654 kb on - strand, within Rru_A2340at 2713.859 kb on - strand, within Rru_A2340at 2714.198 kb on - strandat 2714.313 kb on + strandat 2714.314 kb on - strandat 2714.434 kb on - strandat 2714.441 kb on - strandat 2714.508 kb on + strandat 2714.508 kb on + strandat 2714.508 kb on + strandat 2714.508 kb on + strandat 2714.509 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,713,584 + Rru_A2340 0.71 -0.1
2,713,585 - Rru_A2340 0.71 -0.6
2,713,585 - Rru_A2340 0.71 -0.7
2,713,585 - Rru_A2340 0.71 -2.9
2,713,596 + Rru_A2340 0.71 -1.3
2,713,596 + Rru_A2340 0.71 +1.7
2,713,597 - Rru_A2340 0.71 -0.4
2,713,597 - Rru_A2340 0.71 +0.3
2,713,653 + Rru_A2340 0.75 -0.4
2,713,653 + Rru_A2340 0.75 -1.4
2,713,653 + Rru_A2340 0.75 -2.7
2,713,654 - Rru_A2340 0.75 -1.9
2,713,654 - Rru_A2340 0.75 -2.1
2,713,859 - Rru_A2340 0.86 +0.6
2,714,198 - +1.1
2,714,313 + +1.0
2,714,314 - +1.9
2,714,434 - -2.8
2,714,441 - -3.5
2,714,508 + -3.0
2,714,508 + +0.2
2,714,508 + -2.6
2,714,508 + -2.2
2,714,509 - +0.1

Or see this region's nucleotide sequence