Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2328

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2327 and Rru_A2328 are separated by 1 nucleotidesRru_A2328 and Rru_A2329 overlap by 4 nucleotidesRru_A2329 and Rru_A2330 are separated by 14 nucleotides Rru_A2327: Rru_A2327 - CheA Signal Transduction Histidine Kinases (STHK) (NCBI), at 2,696,616 to 2,699,204 _A2327 Rru_A2328: Rru_A2328 - hypothetical protein (NCBI), at 2,699,206 to 2,699,451 _A2328 Rru_A2329: Rru_A2329 - Cobyrinic acid a,c-diamide synthase (NCBI), at 2,699,448 to 2,700,227 _A2329 Rru_A2330: Rru_A2330 - Response regulator receiver domain protein (CheY) (NCBI), at 2,700,242 to 2,700,616 _A2330 Position (kb) 2699 2700Strain fitness (log2 ratio) -2 -1 0 1 2at 2698.862 kb on + strand, within Rru_A2327at 2698.863 kb on - strand, within Rru_A2327at 2699.639 kb on + strand, within Rru_A2329at 2699.639 kb on + strand, within Rru_A2329at 2699.640 kb on - strand, within Rru_A2329at 2699.640 kb on - strand, within Rru_A2329at 2699.640 kb on - strand, within Rru_A2329at 2699.640 kb on - strand, within Rru_A2329at 2699.820 kb on - strand, within Rru_A2329at 2699.820 kb on - strand, within Rru_A2329at 2699.820 kb on - strand, within Rru_A2329at 2700.044 kb on - strand, within Rru_A2329at 2700.168 kb on + strandat 2700.168 kb on + strandat 2700.169 kb on - strandat 2700.226 kb on - strandat 2700.255 kb on + strandat 2700.256 kb on - strandat 2700.409 kb on + strand, within Rru_A2330at 2700.409 kb on + strand, within Rru_A2330at 2700.409 kb on + strand, within Rru_A2330at 2700.410 kb on - strand, within Rru_A2330at 2700.410 kb on - strand, within Rru_A2330at 2700.410 kb on - strand, within Rru_A2330at 2700.410 kb on - strand, within Rru_A2330

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,698,862 + Rru_A2327 0.87 -1.0
2,698,863 - Rru_A2327 0.87 +0.3
2,699,639 + Rru_A2329 0.24 -1.5
2,699,639 + Rru_A2329 0.24 -1.0
2,699,640 - Rru_A2329 0.25 -1.0
2,699,640 - Rru_A2329 0.25 -0.9
2,699,640 - Rru_A2329 0.25 -1.1
2,699,640 - Rru_A2329 0.25 -1.5
2,699,820 - Rru_A2329 0.48 -0.5
2,699,820 - Rru_A2329 0.48 +1.2
2,699,820 - Rru_A2329 0.48 -0.9
2,700,044 - Rru_A2329 0.76 +0.3
2,700,168 + +0.6
2,700,168 + +0.6
2,700,169 - -2.3
2,700,226 - -2.7
2,700,255 + +0.5
2,700,256 - -2.3
2,700,409 + Rru_A2330 0.45 -0.0
2,700,409 + Rru_A2330 0.45 +1.8
2,700,409 + Rru_A2330 0.45 +1.8
2,700,410 - Rru_A2330 0.45 -0.5
2,700,410 - Rru_A2330 0.45 +2.0
2,700,410 - Rru_A2330 0.45 +0.5
2,700,410 - Rru_A2330 0.45 +0.9

Or see this region's nucleotide sequence