Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2327 and Rru_A2328 are separated by 1 nucleotides Rru_A2328 and Rru_A2329 overlap by 4 nucleotides Rru_A2329 and Rru_A2330 are separated by 14 nucleotides
Rru_A2327: Rru_A2327 - CheA Signal Transduction Histidine Kinases (STHK) (NCBI), at 2,696,616 to 2,699,204
_A2327
Rru_A2328: Rru_A2328 - hypothetical protein (NCBI), at 2,699,206 to 2,699,451
_A2328
Rru_A2329: Rru_A2329 - Cobyrinic acid a,c-diamide synthase (NCBI), at 2,699,448 to 2,700,227
_A2329
Rru_A2330: Rru_A2330 - Response regulator receiver domain protein (CheY) (NCBI), at 2,700,242 to 2,700,616
_A2330
Position (kb)
2699
2700 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2698.862 kb on + strand, within Rru_A2327 at 2698.863 kb on - strand, within Rru_A2327 at 2699.639 kb on + strand, within Rru_A2329 at 2699.639 kb on + strand, within Rru_A2329 at 2699.640 kb on - strand, within Rru_A2329 at 2699.640 kb on - strand, within Rru_A2329 at 2699.640 kb on - strand, within Rru_A2329 at 2699.640 kb on - strand, within Rru_A2329 at 2699.820 kb on - strand, within Rru_A2329 at 2699.820 kb on - strand, within Rru_A2329 at 2699.820 kb on - strand, within Rru_A2329 at 2700.044 kb on - strand, within Rru_A2329 at 2700.168 kb on + strand at 2700.168 kb on + strand at 2700.169 kb on - strand at 2700.226 kb on - strand at 2700.255 kb on + strand at 2700.256 kb on - strand at 2700.409 kb on + strand, within Rru_A2330 at 2700.409 kb on + strand, within Rru_A2330 at 2700.409 kb on + strand, within Rru_A2330 at 2700.410 kb on - strand, within Rru_A2330 at 2700.410 kb on - strand, within Rru_A2330 at 2700.410 kb on - strand, within Rru_A2330 at 2700.410 kb on - strand, within Rru_A2330
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 2,698,862 + Rru_A2327 0.87 -1.0 2,698,863 - Rru_A2327 0.87 +0.3 2,699,639 + Rru_A2329 0.24 -1.5 2,699,639 + Rru_A2329 0.24 -1.0 2,699,640 - Rru_A2329 0.25 -1.0 2,699,640 - Rru_A2329 0.25 -0.9 2,699,640 - Rru_A2329 0.25 -1.1 2,699,640 - Rru_A2329 0.25 -1.5 2,699,820 - Rru_A2329 0.48 -0.5 2,699,820 - Rru_A2329 0.48 +1.2 2,699,820 - Rru_A2329 0.48 -0.9 2,700,044 - Rru_A2329 0.76 +0.3 2,700,168 + +0.6 2,700,168 + +0.6 2,700,169 - -2.3 2,700,226 - -2.7 2,700,255 + +0.5 2,700,256 - -2.3 2,700,409 + Rru_A2330 0.45 -0.0 2,700,409 + Rru_A2330 0.45 +1.8 2,700,409 + Rru_A2330 0.45 +1.8 2,700,410 - Rru_A2330 0.45 -0.5 2,700,410 - Rru_A2330 0.45 +2.0 2,700,410 - Rru_A2330 0.45 +0.5 2,700,410 - Rru_A2330 0.45 +0.9
Or see this region's nucleotide sequence