Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2327

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2325 and Rru_A2326 are separated by 5 nucleotidesRru_A2326 and Rru_A2327 overlap by 4 nucleotidesRru_A2327 and Rru_A2328 are separated by 1 nucleotidesRru_A2328 and Rru_A2329 overlap by 4 nucleotides Rru_A2325: Rru_A2325 - MCP methyltransferase, CheR-type (NCBI), at 2,695,385 to 2,696,215 _A2325 Rru_A2326: Rru_A2326 - Response regulator receiver domain protein (CheY) (NCBI), at 2,696,221 to 2,696,619 _A2326 Rru_A2327: Rru_A2327 - CheA Signal Transduction Histidine Kinases (STHK) (NCBI), at 2,696,616 to 2,699,204 _A2327 Rru_A2328: Rru_A2328 - hypothetical protein (NCBI), at 2,699,206 to 2,699,451 _A2328 Rru_A2329: Rru_A2329 - Cobyrinic acid a,c-diamide synthase (NCBI), at 2,699,448 to 2,700,227 _A2329 Position (kb) 2696 2697 2698 2699 2700Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2695.628 kb on + strand, within Rru_A2325at 2695.629 kb on - strand, within Rru_A2325at 2695.783 kb on + strand, within Rru_A2325at 2695.784 kb on - strand, within Rru_A2325at 2695.784 kb on - strand, within Rru_A2325at 2695.902 kb on - strand, within Rru_A2325at 2695.928 kb on + strand, within Rru_A2325at 2695.928 kb on + strand, within Rru_A2325at 2695.929 kb on - strand, within Rru_A2325at 2696.161 kb on - strandat 2696.196 kb on - strandat 2696.280 kb on - strand, within Rru_A2326at 2696.280 kb on - strand, within Rru_A2326at 2696.280 kb on - strand, within Rru_A2326at 2696.546 kb on - strand, within Rru_A2326at 2696.546 kb on - strand, within Rru_A2326at 2697.144 kb on + strand, within Rru_A2327at 2697.145 kb on - strand, within Rru_A2327at 2697.145 kb on - strand, within Rru_A2327at 2697.145 kb on - strand, within Rru_A2327at 2697.205 kb on + strand, within Rru_A2327at 2697.206 kb on - strand, within Rru_A2327at 2697.206 kb on - strand, within Rru_A2327at 2697.206 kb on - strand, within Rru_A2327at 2697.206 kb on - strand, within Rru_A2327at 2697.342 kb on + strand, within Rru_A2327at 2697.369 kb on - strand, within Rru_A2327at 2697.369 kb on - strand, within Rru_A2327at 2697.508 kb on + strand, within Rru_A2327at 2697.509 kb on - strand, within Rru_A2327at 2697.509 kb on - strand, within Rru_A2327at 2697.509 kb on - strand, within Rru_A2327at 2698.862 kb on + strand, within Rru_A2327at 2698.863 kb on - strand, within Rru_A2327at 2699.639 kb on + strand, within Rru_A2329at 2699.639 kb on + strand, within Rru_A2329at 2699.640 kb on - strand, within Rru_A2329at 2699.640 kb on - strand, within Rru_A2329at 2699.640 kb on - strand, within Rru_A2329at 2699.640 kb on - strand, within Rru_A2329at 2699.820 kb on - strand, within Rru_A2329at 2699.820 kb on - strand, within Rru_A2329at 2699.820 kb on - strand, within Rru_A2329at 2700.044 kb on - strand, within Rru_A2329at 2700.168 kb on + strandat 2700.168 kb on + strandat 2700.169 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,695,628 + Rru_A2325 0.29 +2.8
2,695,629 - Rru_A2325 0.29 -0.2
2,695,783 + Rru_A2325 0.48 +0.7
2,695,784 - Rru_A2325 0.48 +0.9
2,695,784 - Rru_A2325 0.48 -0.7
2,695,902 - Rru_A2325 0.62 +0.2
2,695,928 + Rru_A2325 0.65 +0.3
2,695,928 + Rru_A2325 0.65 -1.2
2,695,929 - Rru_A2325 0.65 -4.0
2,696,161 - +1.0
2,696,196 - +1.6
2,696,280 - Rru_A2326 0.15 -1.2
2,696,280 - Rru_A2326 0.15 +0.2
2,696,280 - Rru_A2326 0.15 +1.9
2,696,546 - Rru_A2326 0.81 -1.2
2,696,546 - Rru_A2326 0.81 +0.3
2,697,144 + Rru_A2327 0.20 -1.6
2,697,145 - Rru_A2327 0.20 +0.5
2,697,145 - Rru_A2327 0.20 -3.0
2,697,145 - Rru_A2327 0.20 -1.3
2,697,205 + Rru_A2327 0.23 -1.1
2,697,206 - Rru_A2327 0.23 -0.7
2,697,206 - Rru_A2327 0.23 +0.1
2,697,206 - Rru_A2327 0.23 +1.0
2,697,206 - Rru_A2327 0.23 -0.3
2,697,342 + Rru_A2327 0.28 +0.5
2,697,369 - Rru_A2327 0.29 +0.4
2,697,369 - Rru_A2327 0.29 -1.2
2,697,508 + Rru_A2327 0.34 +1.3
2,697,509 - Rru_A2327 0.34 +1.3
2,697,509 - Rru_A2327 0.34 +0.4
2,697,509 - Rru_A2327 0.34 +0.3
2,698,862 + Rru_A2327 0.87 -1.0
2,698,863 - Rru_A2327 0.87 +0.3
2,699,639 + Rru_A2329 0.24 -1.5
2,699,639 + Rru_A2329 0.24 -1.0
2,699,640 - Rru_A2329 0.25 -1.0
2,699,640 - Rru_A2329 0.25 -0.9
2,699,640 - Rru_A2329 0.25 -1.1
2,699,640 - Rru_A2329 0.25 -1.5
2,699,820 - Rru_A2329 0.48 -0.5
2,699,820 - Rru_A2329 0.48 +1.2
2,699,820 - Rru_A2329 0.48 -0.9
2,700,044 - Rru_A2329 0.76 +0.3
2,700,168 + +0.6
2,700,168 + +0.6
2,700,169 - -2.3

Or see this region's nucleotide sequence