Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2325 and Rru_A2326 are separated by 5 nucleotides Rru_A2326 and Rru_A2327 overlap by 4 nucleotides Rru_A2327 and Rru_A2328 are separated by 1 nucleotides Rru_A2328 and Rru_A2329 overlap by 4 nucleotides
Rru_A2325: Rru_A2325 - MCP methyltransferase, CheR-type (NCBI), at 2,695,385 to 2,696,215
_A2325
Rru_A2326: Rru_A2326 - Response regulator receiver domain protein (CheY) (NCBI), at 2,696,221 to 2,696,619
_A2326
Rru_A2327: Rru_A2327 - CheA Signal Transduction Histidine Kinases (STHK) (NCBI), at 2,696,616 to 2,699,204
_A2327
Rru_A2328: Rru_A2328 - hypothetical protein (NCBI), at 2,699,206 to 2,699,451
_A2328
Rru_A2329: Rru_A2329 - Cobyrinic acid a,c-diamide synthase (NCBI), at 2,699,448 to 2,700,227
_A2329
Position (kb)
2696
2697
2698
2699
2700 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2695.628 kb on + strand, within Rru_A2325 at 2695.629 kb on - strand, within Rru_A2325 at 2695.783 kb on + strand, within Rru_A2325 at 2695.784 kb on - strand, within Rru_A2325 at 2695.784 kb on - strand, within Rru_A2325 at 2695.902 kb on - strand, within Rru_A2325 at 2695.928 kb on + strand, within Rru_A2325 at 2695.928 kb on + strand, within Rru_A2325 at 2695.929 kb on - strand, within Rru_A2325 at 2696.161 kb on - strand at 2696.196 kb on - strand at 2696.280 kb on - strand, within Rru_A2326 at 2696.280 kb on - strand, within Rru_A2326 at 2696.280 kb on - strand, within Rru_A2326 at 2696.546 kb on - strand, within Rru_A2326 at 2696.546 kb on - strand, within Rru_A2326 at 2697.144 kb on + strand, within Rru_A2327 at 2697.145 kb on - strand, within Rru_A2327 at 2697.145 kb on - strand, within Rru_A2327 at 2697.145 kb on - strand, within Rru_A2327 at 2697.205 kb on + strand, within Rru_A2327 at 2697.206 kb on - strand, within Rru_A2327 at 2697.206 kb on - strand, within Rru_A2327 at 2697.206 kb on - strand, within Rru_A2327 at 2697.206 kb on - strand, within Rru_A2327 at 2697.342 kb on + strand, within Rru_A2327 at 2697.369 kb on - strand, within Rru_A2327 at 2697.369 kb on - strand, within Rru_A2327 at 2697.508 kb on + strand, within Rru_A2327 at 2697.509 kb on - strand, within Rru_A2327 at 2697.509 kb on - strand, within Rru_A2327 at 2697.509 kb on - strand, within Rru_A2327 at 2698.862 kb on + strand, within Rru_A2327 at 2698.863 kb on - strand, within Rru_A2327 at 2699.639 kb on + strand, within Rru_A2329 at 2699.639 kb on + strand, within Rru_A2329 at 2699.640 kb on - strand, within Rru_A2329 at 2699.640 kb on - strand, within Rru_A2329 at 2699.640 kb on - strand, within Rru_A2329 at 2699.640 kb on - strand, within Rru_A2329 at 2699.820 kb on - strand, within Rru_A2329 at 2699.820 kb on - strand, within Rru_A2329 at 2699.820 kb on - strand, within Rru_A2329 at 2700.044 kb on - strand, within Rru_A2329 at 2700.168 kb on + strand at 2700.168 kb on + strand at 2700.169 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 2,695,628 + Rru_A2325 0.29 +2.8 2,695,629 - Rru_A2325 0.29 -0.2 2,695,783 + Rru_A2325 0.48 +0.7 2,695,784 - Rru_A2325 0.48 +0.9 2,695,784 - Rru_A2325 0.48 -0.7 2,695,902 - Rru_A2325 0.62 +0.2 2,695,928 + Rru_A2325 0.65 +0.3 2,695,928 + Rru_A2325 0.65 -1.2 2,695,929 - Rru_A2325 0.65 -4.0 2,696,161 - +1.0 2,696,196 - +1.6 2,696,280 - Rru_A2326 0.15 -1.2 2,696,280 - Rru_A2326 0.15 +0.2 2,696,280 - Rru_A2326 0.15 +1.9 2,696,546 - Rru_A2326 0.81 -1.2 2,696,546 - Rru_A2326 0.81 +0.3 2,697,144 + Rru_A2327 0.20 -1.6 2,697,145 - Rru_A2327 0.20 +0.5 2,697,145 - Rru_A2327 0.20 -3.0 2,697,145 - Rru_A2327 0.20 -1.3 2,697,205 + Rru_A2327 0.23 -1.1 2,697,206 - Rru_A2327 0.23 -0.7 2,697,206 - Rru_A2327 0.23 +0.1 2,697,206 - Rru_A2327 0.23 +1.0 2,697,206 - Rru_A2327 0.23 -0.3 2,697,342 + Rru_A2327 0.28 +0.5 2,697,369 - Rru_A2327 0.29 +0.4 2,697,369 - Rru_A2327 0.29 -1.2 2,697,508 + Rru_A2327 0.34 +1.3 2,697,509 - Rru_A2327 0.34 +1.3 2,697,509 - Rru_A2327 0.34 +0.4 2,697,509 - Rru_A2327 0.34 +0.3 2,698,862 + Rru_A2327 0.87 -1.0 2,698,863 - Rru_A2327 0.87 +0.3 2,699,639 + Rru_A2329 0.24 -1.5 2,699,639 + Rru_A2329 0.24 -1.0 2,699,640 - Rru_A2329 0.25 -1.0 2,699,640 - Rru_A2329 0.25 -0.9 2,699,640 - Rru_A2329 0.25 -1.1 2,699,640 - Rru_A2329 0.25 -1.5 2,699,820 - Rru_A2329 0.48 -0.5 2,699,820 - Rru_A2329 0.48 +1.2 2,699,820 - Rru_A2329 0.48 -0.9 2,700,044 - Rru_A2329 0.76 +0.3 2,700,168 + +0.6 2,700,168 + +0.6 2,700,169 - -2.3
Or see this region's nucleotide sequence