Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2290

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2289 and Rru_A2290 overlap by 1 nucleotidesRru_A2290 and Rru_A2291 are separated by 124 nucleotides Rru_A2289: Rru_A2289 - Sulfate adenylyltransferase, small subunit (NCBI), at 2,647,248 to 2,648,138 _A2289 Rru_A2290: Rru_A2290 - Sulfate adenylyltransferase, large subunit (NCBI), at 2,648,138 to 2,650,063 _A2290 Rru_A2291: Rru_A2291 - DNA/RNA non-specific endonuclease (NCBI), at 2,650,188 to 2,652,353 _A2291 Position (kb) 2648 2649 2650 2651Strain fitness (log2 ratio) -3 -2 -1 0 1at 2650.168 kb on + strandat 2650.169 kb on - strandat 2650.169 kb on - strandat 2650.169 kb on - strandat 2650.816 kb on + strand, within Rru_A2291at 2650.817 kb on - strand, within Rru_A2291at 2650.860 kb on + strand, within Rru_A2291at 2650.861 kb on - strand, within Rru_A2291at 2650.861 kb on - strand, within Rru_A2291at 2650.919 kb on + strand, within Rru_A2291at 2650.919 kb on + strand, within Rru_A2291at 2650.920 kb on - strand, within Rru_A2291at 2651.035 kb on - strand, within Rru_A2291

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,650,168 + -2.9
2,650,169 - +0.2
2,650,169 - -1.1
2,650,169 - -2.7
2,650,816 + Rru_A2291 0.29 -2.7
2,650,817 - Rru_A2291 0.29 -2.2
2,650,860 + Rru_A2291 0.31 -0.2
2,650,861 - Rru_A2291 0.31 -2.1
2,650,861 - Rru_A2291 0.31 -2.4
2,650,919 + Rru_A2291 0.34 +0.1
2,650,919 + Rru_A2291 0.34 -1.9
2,650,920 - Rru_A2291 0.34 -1.6
2,651,035 - Rru_A2291 0.39 +0.9

Or see this region's nucleotide sequence