Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2289

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2287 and Rru_A2288 are separated by 32 nucleotidesRru_A2288 and Rru_A2289 are separated by 308 nucleotidesRru_A2289 and Rru_A2290 overlap by 1 nucleotides Rru_A2287: Rru_A2287 - Protein of unknown function DUF86 (NCBI), at 2,646,281 to 2,646,616 _A2287 Rru_A2288: Rru_A2288 - DNA polymerase, beta-like region (NCBI), at 2,646,649 to 2,646,939 _A2288 Rru_A2289: Rru_A2289 - Sulfate adenylyltransferase, small subunit (NCBI), at 2,647,248 to 2,648,138 _A2289 Rru_A2290: Rru_A2290 - Sulfate adenylyltransferase, large subunit (NCBI), at 2,648,138 to 2,650,063 _A2290 Position (kb) 2647 2648 2649Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2646.254 kb on + strandat 2646.254 kb on + strandat 2646.255 kb on - strandat 2646.255 kb on - strandat 2646.255 kb on - strandat 2646.547 kb on + strand, within Rru_A2287at 2646.573 kb on + strand, within Rru_A2287at 2646.573 kb on + strand, within Rru_A2287at 2646.573 kb on + strand, within Rru_A2287at 2646.574 kb on - strand, within Rru_A2287at 2646.574 kb on - strand, within Rru_A2287at 2646.912 kb on + strandat 2646.970 kb on + strandat 2647.018 kb on + strandat 2647.019 kb on - strandat 2647.019 kb on - strandat 2647.019 kb on - strandat 2647.019 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,646,254 + +3.2
2,646,254 + +0.3
2,646,255 - +1.2
2,646,255 - +1.2
2,646,255 - +0.8
2,646,547 + Rru_A2287 0.79 +2.1
2,646,573 + Rru_A2287 0.87 +4.5
2,646,573 + Rru_A2287 0.87 +1.0
2,646,573 + Rru_A2287 0.87 +1.5
2,646,574 - Rru_A2287 0.87 -3.0
2,646,574 - Rru_A2287 0.87 -2.0
2,646,912 + +1.8
2,646,970 + +2.3
2,647,018 + -1.2
2,647,019 - -0.8
2,647,019 - +1.0
2,647,019 - +0.5
2,647,019 - -1.4

Or see this region's nucleotide sequence