Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2211

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2209 and Rru_A2210 are separated by 153 nucleotidesRru_A2210 and Rru_A2211 are separated by 203 nucleotidesRru_A2211 and Rru_A2212 are separated by 201 nucleotides Rru_A2209: Rru_A2209 - AsmA (NCBI), at 2,564,644 to 2,567,877 _A2209 Rru_A2210: Rru_A2210 - Phosphoglycerate/bisphosphoglycerate mutase (NCBI), at 2,568,031 to 2,568,606 _A2210 Rru_A2211: Rru_A2211 - Porin, Gram-negative type (NCBI), at 2,568,810 to 2,569,898 _A2211 Rru_A2212: Rru_A2212 - hypothetical protein (NCBI), at 2,570,100 to 2,571,146 _A2212 Position (kb) 2568 2569 2570Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2567.867 kb on - strandat 2567.891 kb on + strandat 2567.892 kb on - strandat 2567.892 kb on - strandat 2567.898 kb on - strandat 2567.925 kb on + strandat 2567.932 kb on + strandat 2567.932 kb on + strandat 2567.932 kb on + strandat 2567.932 kb on + strandat 2567.932 kb on + strandat 2567.933 kb on - strandat 2568.008 kb on + strandat 2568.009 kb on - strandat 2568.009 kb on - strandat 2568.009 kb on - strandat 2568.009 kb on - strandat 2568.021 kb on + strandat 2568.022 kb on - strandat 2568.282 kb on + strand, within Rru_A2210at 2568.563 kb on + strandat 2568.564 kb on - strandat 2568.581 kb on - strandat 2568.630 kb on + strandat 2568.631 kb on - strandat 2568.698 kb on - strandat 2568.751 kb on + strandat 2570.025 kb on - strandat 2570.101 kb on + strandat 2570.101 kb on + strandat 2570.102 kb on - strandat 2570.102 kb on - strandat 2570.102 kb on - strandat 2570.102 kb on - strandat 2570.179 kb on + strandat 2570.179 kb on + strandat 2570.190 kb on - strandat 2570.221 kb on + strand, within Rru_A2212at 2570.222 kb on - strand, within Rru_A2212at 2570.222 kb on - strand, within Rru_A2212at 2570.239 kb on + strand, within Rru_A2212at 2570.239 kb on + strand, within Rru_A2212at 2570.240 kb on - strand, within Rru_A2212at 2570.240 kb on - strand, within Rru_A2212at 2570.240 kb on - strand, within Rru_A2212at 2570.240 kb on - strand, within Rru_A2212at 2570.240 kb on - strand, within Rru_A2212at 2570.315 kb on - strand, within Rru_A2212at 2570.365 kb on + strand, within Rru_A2212at 2570.366 kb on - strand, within Rru_A2212at 2570.408 kb on - strand, within Rru_A2212at 2570.408 kb on - strand, within Rru_A2212at 2570.434 kb on + strand, within Rru_A2212at 2570.434 kb on + strand, within Rru_A2212at 2570.434 kb on + strand, within Rru_A2212at 2570.434 kb on + strand, within Rru_A2212at 2570.435 kb on - strand, within Rru_A2212at 2570.458 kb on + strand, within Rru_A2212at 2570.459 kb on - strand, within Rru_A2212at 2570.525 kb on + strand, within Rru_A2212at 2570.526 kb on - strand, within Rru_A2212at 2570.526 kb on - strand, within Rru_A2212at 2570.526 kb on - strand, within Rru_A2212at 2570.526 kb on - strand, within Rru_A2212at 2570.531 kb on - strand, within Rru_A2212at 2570.606 kb on - strand, within Rru_A2212at 2570.606 kb on - strand, within Rru_A2212at 2570.629 kb on + strand, within Rru_A2212at 2570.629 kb on + strand, within Rru_A2212at 2570.629 kb on + strand, within Rru_A2212at 2570.630 kb on - strand, within Rru_A2212at 2570.647 kb on + strand, within Rru_A2212at 2570.648 kb on - strand, within Rru_A2212at 2570.648 kb on - strand, within Rru_A2212at 2570.692 kb on + strand, within Rru_A2212at 2570.692 kb on + strand, within Rru_A2212at 2570.693 kb on - strand, within Rru_A2212at 2570.693 kb on - strand, within Rru_A2212at 2570.693 kb on - strand, within Rru_A2212at 2570.693 kb on - strand, within Rru_A2212at 2570.693 kb on - strand, within Rru_A2212at 2570.693 kb on - strand, within Rru_A2212at 2570.695 kb on + strand, within Rru_A2212at 2570.695 kb on + strand, within Rru_A2212at 2570.696 kb on - strand, within Rru_A2212at 2570.696 kb on - strand, within Rru_A2212at 2570.731 kb on + strand, within Rru_A2212at 2570.834 kb on + strand, within Rru_A2212at 2570.860 kb on + strand, within Rru_A2212at 2570.860 kb on + strand, within Rru_A2212at 2570.860 kb on + strand, within Rru_A2212at 2570.860 kb on + strand, within Rru_A2212at 2570.861 kb on - strand, within Rru_A2212

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,567,867 - -4.1
2,567,891 + -0.8
2,567,892 - +0.7
2,567,892 - -3.4
2,567,898 - -0.3
2,567,925 + +2.4
2,567,932 + -1.0
2,567,932 + -0.8
2,567,932 + +0.1
2,567,932 + +1.5
2,567,932 + +2.5
2,567,933 - -2.6
2,568,008 + +0.2
2,568,009 - -1.0
2,568,009 - +1.7
2,568,009 - -2.0
2,568,009 - +0.2
2,568,021 + +0.1
2,568,022 - -2.4
2,568,282 + Rru_A2210 0.44 -1.4
2,568,563 + -1.1
2,568,564 - +1.1
2,568,581 - -2.1
2,568,630 + +1.4
2,568,631 - -1.0
2,568,698 - -0.4
2,568,751 + +2.1
2,570,025 - +2.1
2,570,101 + +0.2
2,570,101 + +1.5
2,570,102 - -2.3
2,570,102 - -1.8
2,570,102 - -0.2
2,570,102 - -2.5
2,570,179 + +2.8
2,570,179 + -1.1
2,570,190 - -0.7
2,570,221 + Rru_A2212 0.12 +3.7
2,570,222 - Rru_A2212 0.12 -0.7
2,570,222 - Rru_A2212 0.12 -0.4
2,570,239 + Rru_A2212 0.13 +1.2
2,570,239 + Rru_A2212 0.13 -3.1
2,570,240 - Rru_A2212 0.13 -2.8
2,570,240 - Rru_A2212 0.13 -1.1
2,570,240 - Rru_A2212 0.13 -2.3
2,570,240 - Rru_A2212 0.13 -0.4
2,570,240 - Rru_A2212 0.13 -1.8
2,570,315 - Rru_A2212 0.21 +3.8
2,570,365 + Rru_A2212 0.25 -2.6
2,570,366 - Rru_A2212 0.25 -0.9
2,570,408 - Rru_A2212 0.29 -2.8
2,570,408 - Rru_A2212 0.29 -0.3
2,570,434 + Rru_A2212 0.32 +0.7
2,570,434 + Rru_A2212 0.32 +0.2
2,570,434 + Rru_A2212 0.32 +0.5
2,570,434 + Rru_A2212 0.32 +3.3
2,570,435 - Rru_A2212 0.32 -1.1
2,570,458 + Rru_A2212 0.34 -0.3
2,570,459 - Rru_A2212 0.34 +0.7
2,570,525 + Rru_A2212 0.41 -0.3
2,570,526 - Rru_A2212 0.41 +0.1
2,570,526 - Rru_A2212 0.41 -0.8
2,570,526 - Rru_A2212 0.41 +0.4
2,570,526 - Rru_A2212 0.41 +0.4
2,570,531 - Rru_A2212 0.41 -3.1
2,570,606 - Rru_A2212 0.48 -3.9
2,570,606 - Rru_A2212 0.48 +1.0
2,570,629 + Rru_A2212 0.51 -1.3
2,570,629 + Rru_A2212 0.51 +3.2
2,570,629 + Rru_A2212 0.51 +0.5
2,570,630 - Rru_A2212 0.51 -0.2
2,570,647 + Rru_A2212 0.52 +0.9
2,570,648 - Rru_A2212 0.52 +1.3
2,570,648 - Rru_A2212 0.52 -0.3
2,570,692 + Rru_A2212 0.57 +2.1
2,570,692 + Rru_A2212 0.57 +1.4
2,570,693 - Rru_A2212 0.57 +0.5
2,570,693 - Rru_A2212 0.57 +0.9
2,570,693 - Rru_A2212 0.57 -1.7
2,570,693 - Rru_A2212 0.57 +1.1
2,570,693 - Rru_A2212 0.57 +1.7
2,570,693 - Rru_A2212 0.57 +0.4
2,570,695 + Rru_A2212 0.57 +0.2
2,570,695 + Rru_A2212 0.57 -0.8
2,570,696 - Rru_A2212 0.57 -0.3
2,570,696 - Rru_A2212 0.57 +0.8
2,570,731 + Rru_A2212 0.60 +0.6
2,570,834 + Rru_A2212 0.70 +0.3
2,570,860 + Rru_A2212 0.73 -0.8
2,570,860 + Rru_A2212 0.73 -1.3
2,570,860 + Rru_A2212 0.73 -1.1
2,570,860 + Rru_A2212 0.73 +0.2
2,570,861 - Rru_A2212 0.73 +3.7

Or see this region's nucleotide sequence