Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2209 and Rru_A2210 are separated by 153 nucleotides Rru_A2210 and Rru_A2211 are separated by 203 nucleotides Rru_A2211 and Rru_A2212 are separated by 201 nucleotides
Rru_A2209: Rru_A2209 - AsmA (NCBI), at 2,564,644 to 2,567,877
_A2209
Rru_A2210: Rru_A2210 - Phosphoglycerate/bisphosphoglycerate mutase (NCBI), at 2,568,031 to 2,568,606
_A2210
Rru_A2211: Rru_A2211 - Porin, Gram-negative type (NCBI), at 2,568,810 to 2,569,898
_A2211
Rru_A2212: Rru_A2212 - hypothetical protein (NCBI), at 2,570,100 to 2,571,146
_A2212
Position (kb)
2568
2569
2570 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2567.867 kb on - strand at 2567.891 kb on + strand at 2567.892 kb on - strand at 2567.892 kb on - strand at 2567.898 kb on - strand at 2567.925 kb on + strand at 2567.932 kb on + strand at 2567.932 kb on + strand at 2567.932 kb on + strand at 2567.932 kb on + strand at 2567.932 kb on + strand at 2567.933 kb on - strand at 2568.008 kb on + strand at 2568.009 kb on - strand at 2568.009 kb on - strand at 2568.009 kb on - strand at 2568.009 kb on - strand at 2568.021 kb on + strand at 2568.022 kb on - strand at 2568.282 kb on + strand, within Rru_A2210 at 2568.563 kb on + strand at 2568.564 kb on - strand at 2568.581 kb on - strand at 2568.630 kb on + strand at 2568.631 kb on - strand at 2568.698 kb on - strand at 2568.751 kb on + strand at 2570.025 kb on - strand at 2570.101 kb on + strand at 2570.101 kb on + strand at 2570.102 kb on - strand at 2570.102 kb on - strand at 2570.102 kb on - strand at 2570.102 kb on - strand at 2570.179 kb on + strand at 2570.179 kb on + strand at 2570.190 kb on - strand at 2570.221 kb on + strand, within Rru_A2212 at 2570.222 kb on - strand, within Rru_A2212 at 2570.222 kb on - strand, within Rru_A2212 at 2570.239 kb on + strand, within Rru_A2212 at 2570.239 kb on + strand, within Rru_A2212 at 2570.240 kb on - strand, within Rru_A2212 at 2570.240 kb on - strand, within Rru_A2212 at 2570.240 kb on - strand, within Rru_A2212 at 2570.240 kb on - strand, within Rru_A2212 at 2570.240 kb on - strand, within Rru_A2212 at 2570.315 kb on - strand, within Rru_A2212 at 2570.365 kb on + strand, within Rru_A2212 at 2570.366 kb on - strand, within Rru_A2212 at 2570.408 kb on - strand, within Rru_A2212 at 2570.408 kb on - strand, within Rru_A2212 at 2570.434 kb on + strand, within Rru_A2212 at 2570.434 kb on + strand, within Rru_A2212 at 2570.434 kb on + strand, within Rru_A2212 at 2570.434 kb on + strand, within Rru_A2212 at 2570.435 kb on - strand, within Rru_A2212 at 2570.458 kb on + strand, within Rru_A2212 at 2570.459 kb on - strand, within Rru_A2212 at 2570.525 kb on + strand, within Rru_A2212 at 2570.526 kb on - strand, within Rru_A2212 at 2570.526 kb on - strand, within Rru_A2212 at 2570.526 kb on - strand, within Rru_A2212 at 2570.526 kb on - strand, within Rru_A2212 at 2570.531 kb on - strand, within Rru_A2212 at 2570.606 kb on - strand, within Rru_A2212 at 2570.606 kb on - strand, within Rru_A2212 at 2570.629 kb on + strand, within Rru_A2212 at 2570.629 kb on + strand, within Rru_A2212 at 2570.629 kb on + strand, within Rru_A2212 at 2570.630 kb on - strand, within Rru_A2212 at 2570.647 kb on + strand, within Rru_A2212 at 2570.648 kb on - strand, within Rru_A2212 at 2570.648 kb on - strand, within Rru_A2212 at 2570.692 kb on + strand, within Rru_A2212 at 2570.692 kb on + strand, within Rru_A2212 at 2570.693 kb on - strand, within Rru_A2212 at 2570.693 kb on - strand, within Rru_A2212 at 2570.693 kb on - strand, within Rru_A2212 at 2570.693 kb on - strand, within Rru_A2212 at 2570.693 kb on - strand, within Rru_A2212 at 2570.693 kb on - strand, within Rru_A2212 at 2570.695 kb on + strand, within Rru_A2212 at 2570.695 kb on + strand, within Rru_A2212 at 2570.696 kb on - strand, within Rru_A2212 at 2570.696 kb on - strand, within Rru_A2212 at 2570.731 kb on + strand, within Rru_A2212 at 2570.834 kb on + strand, within Rru_A2212 at 2570.860 kb on + strand, within Rru_A2212 at 2570.860 kb on + strand, within Rru_A2212 at 2570.860 kb on + strand, within Rru_A2212 at 2570.860 kb on + strand, within Rru_A2212 at 2570.861 kb on - strand, within Rru_A2212
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 2,567,867 - -4.1 2,567,891 + -0.8 2,567,892 - +0.7 2,567,892 - -3.4 2,567,898 - -0.3 2,567,925 + +2.4 2,567,932 + -1.0 2,567,932 + -0.8 2,567,932 + +0.1 2,567,932 + +1.5 2,567,932 + +2.5 2,567,933 - -2.6 2,568,008 + +0.2 2,568,009 - -1.0 2,568,009 - +1.7 2,568,009 - -2.0 2,568,009 - +0.2 2,568,021 + +0.1 2,568,022 - -2.4 2,568,282 + Rru_A2210 0.44 -1.4 2,568,563 + -1.1 2,568,564 - +1.1 2,568,581 - -2.1 2,568,630 + +1.4 2,568,631 - -1.0 2,568,698 - -0.4 2,568,751 + +2.1 2,570,025 - +2.1 2,570,101 + +0.2 2,570,101 + +1.5 2,570,102 - -2.3 2,570,102 - -1.8 2,570,102 - -0.2 2,570,102 - -2.5 2,570,179 + +2.8 2,570,179 + -1.1 2,570,190 - -0.7 2,570,221 + Rru_A2212 0.12 +3.7 2,570,222 - Rru_A2212 0.12 -0.7 2,570,222 - Rru_A2212 0.12 -0.4 2,570,239 + Rru_A2212 0.13 +1.2 2,570,239 + Rru_A2212 0.13 -3.1 2,570,240 - Rru_A2212 0.13 -2.8 2,570,240 - Rru_A2212 0.13 -1.1 2,570,240 - Rru_A2212 0.13 -2.3 2,570,240 - Rru_A2212 0.13 -0.4 2,570,240 - Rru_A2212 0.13 -1.8 2,570,315 - Rru_A2212 0.21 +3.8 2,570,365 + Rru_A2212 0.25 -2.6 2,570,366 - Rru_A2212 0.25 -0.9 2,570,408 - Rru_A2212 0.29 -2.8 2,570,408 - Rru_A2212 0.29 -0.3 2,570,434 + Rru_A2212 0.32 +0.7 2,570,434 + Rru_A2212 0.32 +0.2 2,570,434 + Rru_A2212 0.32 +0.5 2,570,434 + Rru_A2212 0.32 +3.3 2,570,435 - Rru_A2212 0.32 -1.1 2,570,458 + Rru_A2212 0.34 -0.3 2,570,459 - Rru_A2212 0.34 +0.7 2,570,525 + Rru_A2212 0.41 -0.3 2,570,526 - Rru_A2212 0.41 +0.1 2,570,526 - Rru_A2212 0.41 -0.8 2,570,526 - Rru_A2212 0.41 +0.4 2,570,526 - Rru_A2212 0.41 +0.4 2,570,531 - Rru_A2212 0.41 -3.1 2,570,606 - Rru_A2212 0.48 -3.9 2,570,606 - Rru_A2212 0.48 +1.0 2,570,629 + Rru_A2212 0.51 -1.3 2,570,629 + Rru_A2212 0.51 +3.2 2,570,629 + Rru_A2212 0.51 +0.5 2,570,630 - Rru_A2212 0.51 -0.2 2,570,647 + Rru_A2212 0.52 +0.9 2,570,648 - Rru_A2212 0.52 +1.3 2,570,648 - Rru_A2212 0.52 -0.3 2,570,692 + Rru_A2212 0.57 +2.1 2,570,692 + Rru_A2212 0.57 +1.4 2,570,693 - Rru_A2212 0.57 +0.5 2,570,693 - Rru_A2212 0.57 +0.9 2,570,693 - Rru_A2212 0.57 -1.7 2,570,693 - Rru_A2212 0.57 +1.1 2,570,693 - Rru_A2212 0.57 +1.7 2,570,693 - Rru_A2212 0.57 +0.4 2,570,695 + Rru_A2212 0.57 +0.2 2,570,695 + Rru_A2212 0.57 -0.8 2,570,696 - Rru_A2212 0.57 -0.3 2,570,696 - Rru_A2212 0.57 +0.8 2,570,731 + Rru_A2212 0.60 +0.6 2,570,834 + Rru_A2212 0.70 +0.3 2,570,860 + Rru_A2212 0.73 -0.8 2,570,860 + Rru_A2212 0.73 -1.3 2,570,860 + Rru_A2212 0.73 -1.1 2,570,860 + Rru_A2212 0.73 +0.2 2,570,861 - Rru_A2212 0.73 +3.7
Or see this region's nucleotide sequence