Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2204

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A2203 and Rru_A2204 are separated by 198 nucleotidesRru_A2204 and ssrA are separated by 75 nucleotidesssrA and Rru_A2205 are separated by 187 nucleotides Rru_A2203: Rru_A2203 - HflK (NCBI), at 2,558,051 to 2,559,274 _A2203 Rru_A2204: Rru_A2204 - Protein of unknown function DUF59 (NCBI), at 2,559,473 to 2,560,621 _A2204 Rru_AR0040: ssrA - tmRNA, 10Sa RNA (NCBI), at 2,560,697 to 2,560,938 ssrA Rru_A2205: Rru_A2205 - Protein of unknown function DUF1321 (NCBI), at 2,561,126 to 2,561,716 _A2205 Position (kb) 2559 2560 2561Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2559.316 kb on - strandat 2559.357 kb on - strandat 2559.357 kb on - strandat 2560.999 kb on + strandat 2561.000 kb on - strandat 2561.000 kb on - strandat 2561.066 kb on + strandat 2561.066 kb on + strandat 2561.087 kb on + strandat 2561.088 kb on - strandat 2561.125 kb on + strandat 2561.125 kb on + strandat 2561.125 kb on + strandat 2561.125 kb on + strandat 2561.126 kb on - strandat 2561.126 kb on - strandat 2561.126 kb on - strandat 2561.130 kb on + strandat 2561.130 kb on + strandat 2561.136 kb on + strandat 2561.136 kb on + strandat 2561.136 kb on + strandat 2561.136 kb on + strandat 2561.136 kb on + strandat 2561.137 kb on - strandat 2561.137 kb on - strandat 2561.137 kb on - strandat 2561.137 kb on - strandat 2561.137 kb on - strandat 2561.218 kb on + strand, within Rru_A2205at 2561.303 kb on + strand, within Rru_A2205at 2561.303 kb on + strand, within Rru_A2205at 2561.303 kb on + strand, within Rru_A2205at 2561.303 kb on + strand, within Rru_A2205at 2561.303 kb on + strand, within Rru_A2205at 2561.307 kb on + strand, within Rru_A2205at 2561.307 kb on + strand, within Rru_A2205at 2561.307 kb on + strand, within Rru_A2205

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
2,559,316 - +0.0
2,559,357 - -0.1
2,559,357 - +0.5
2,560,999 + -1.8
2,561,000 - -0.6
2,561,000 - +0.3
2,561,066 + -3.0
2,561,066 + -3.0
2,561,087 + -1.1
2,561,088 - -0.8
2,561,125 + +0.2
2,561,125 + +1.0
2,561,125 + -1.7
2,561,125 + +0.2
2,561,126 - +1.7
2,561,126 - -0.1
2,561,126 - -1.8
2,561,130 + -3.8
2,561,130 + +0.1
2,561,136 + -0.6
2,561,136 + -0.8
2,561,136 + +0.5
2,561,136 + -1.1
2,561,136 + +1.5
2,561,137 - -0.8
2,561,137 - -0.9
2,561,137 - +2.0
2,561,137 - +3.6
2,561,137 - +1.7
2,561,218 + Rru_A2205 0.16 +2.2
2,561,303 + Rru_A2205 0.30 +2.7
2,561,303 + Rru_A2205 0.30 +1.6
2,561,303 + Rru_A2205 0.30 -1.1
2,561,303 + Rru_A2205 0.30 -1.8
2,561,303 + Rru_A2205 0.30 -0.7
2,561,307 + Rru_A2205 0.31 -0.3
2,561,307 + Rru_A2205 0.31 -0.0
2,561,307 + Rru_A2205 0.31 -0.7

Or see this region's nucleotide sequence