Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2203 and Rru_A2204 are separated by 198 nucleotides Rru_A2204 and ssrA are separated by 75 nucleotides ssrA and Rru_A2205 are separated by 187 nucleotides
Rru_A2203: Rru_A2203 - HflK (NCBI), at 2,558,051 to 2,559,274
_A2203
Rru_A2204: Rru_A2204 - Protein of unknown function DUF59 (NCBI), at 2,559,473 to 2,560,621
_A2204
Rru_AR0040: ssrA - tmRNA, 10Sa RNA (NCBI), at 2,560,697 to 2,560,938
ssrA
Rru_A2205: Rru_A2205 - Protein of unknown function DUF1321 (NCBI), at 2,561,126 to 2,561,716
_A2205
Position (kb)
2559
2560
2561 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2559.316 kb on - strand at 2559.357 kb on - strand at 2559.357 kb on - strand at 2560.999 kb on + strand at 2561.000 kb on - strand at 2561.000 kb on - strand at 2561.066 kb on + strand at 2561.066 kb on + strand at 2561.087 kb on + strand at 2561.088 kb on - strand at 2561.125 kb on + strand at 2561.125 kb on + strand at 2561.125 kb on + strand at 2561.125 kb on + strand at 2561.126 kb on - strand at 2561.126 kb on - strand at 2561.126 kb on - strand at 2561.130 kb on + strand at 2561.130 kb on + strand at 2561.136 kb on + strand at 2561.136 kb on + strand at 2561.136 kb on + strand at 2561.136 kb on + strand at 2561.136 kb on + strand at 2561.137 kb on - strand at 2561.137 kb on - strand at 2561.137 kb on - strand at 2561.137 kb on - strand at 2561.137 kb on - strand at 2561.218 kb on + strand, within Rru_A2205 at 2561.303 kb on + strand, within Rru_A2205 at 2561.303 kb on + strand, within Rru_A2205 at 2561.303 kb on + strand, within Rru_A2205 at 2561.303 kb on + strand, within Rru_A2205 at 2561.303 kb on + strand, within Rru_A2205 at 2561.307 kb on + strand, within Rru_A2205 at 2561.307 kb on + strand, within Rru_A2205 at 2561.307 kb on + strand, within Rru_A2205
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 2,559,316 - +0.0 2,559,357 - -0.1 2,559,357 - +0.5 2,560,999 + -1.8 2,561,000 - -0.6 2,561,000 - +0.3 2,561,066 + -3.0 2,561,066 + -3.0 2,561,087 + -1.1 2,561,088 - -0.8 2,561,125 + +0.2 2,561,125 + +1.0 2,561,125 + -1.7 2,561,125 + +0.2 2,561,126 - +1.7 2,561,126 - -0.1 2,561,126 - -1.8 2,561,130 + -3.8 2,561,130 + +0.1 2,561,136 + -0.6 2,561,136 + -0.8 2,561,136 + +0.5 2,561,136 + -1.1 2,561,136 + +1.5 2,561,137 - -0.8 2,561,137 - -0.9 2,561,137 - +2.0 2,561,137 - +3.6 2,561,137 - +1.7 2,561,218 + Rru_A2205 0.16 +2.2 2,561,303 + Rru_A2205 0.30 +2.7 2,561,303 + Rru_A2205 0.30 +1.6 2,561,303 + Rru_A2205 0.30 -1.1 2,561,303 + Rru_A2205 0.30 -1.8 2,561,303 + Rru_A2205 0.30 -0.7 2,561,307 + Rru_A2205 0.31 -0.3 2,561,307 + Rru_A2205 0.31 -0.0 2,561,307 + Rru_A2205 0.31 -0.7
Or see this region's nucleotide sequence