Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2203

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2202 and Rru_A2203 overlap by 4 nucleotidesRru_A2203 and Rru_A2204 are separated by 198 nucleotides Rru_A2202: Rru_A2202 - HflC (NCBI), at 2,557,173 to 2,558,054 _A2202 Rru_A2203: Rru_A2203 - HflK (NCBI), at 2,558,051 to 2,559,274 _A2203 Rru_A2204: Rru_A2204 - Protein of unknown function DUF59 (NCBI), at 2,559,473 to 2,560,621 _A2204 Position (kb) 2558 2559 2560Strain fitness (log2 ratio) -1 0 1at 2559.316 kb on - strandat 2559.357 kb on - strandat 2559.357 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,559,316 - +0.0
2,559,357 - -0.1
2,559,357 - +0.5

Or see this region's nucleotide sequence