Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2202

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2201 and Rru_A2202 are separated by 353 nucleotidesRru_A2202 and Rru_A2203 overlap by 4 nucleotides Rru_A2201: Rru_A2201 - Peptidase S1C, Do (NCBI), at 2,555,293 to 2,556,819 _A2201 Rru_A2202: Rru_A2202 - HflC (NCBI), at 2,557,173 to 2,558,054 _A2202 Rru_A2203: Rru_A2203 - HflK (NCBI), at 2,558,051 to 2,559,274 _A2203 Position (kb) 2557 2558 2559Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2556.441 kb on + strand, within Rru_A2201at 2556.441 kb on + strand, within Rru_A2201at 2556.443 kb on + strand, within Rru_A2201at 2556.444 kb on - strand, within Rru_A2201at 2556.996 kb on + strandat 2556.997 kb on - strandat 2556.997 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,556,441 + Rru_A2201 0.75 -3.9
2,556,441 + Rru_A2201 0.75 -3.3
2,556,443 + Rru_A2201 0.75 +0.2
2,556,444 - Rru_A2201 0.75 -0.2
2,556,996 + -2.8
2,556,997 - +0.6
2,556,997 - +0.1

Or see this region's nucleotide sequence