Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2168

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2167 and Rru_A2168 overlap by 4 nucleotidesRru_A2168 and Rru_A2169 are separated by 99 nucleotidesRru_A2169 and Rru_A2170 are separated by 399 nucleotides Rru_A2167: Rru_A2167 - Phosphoribosylformylglycinamidine cyclo-ligase (NCBI), at 2,516,259 to 2,517,425 _A2167 Rru_A2168: Rru_A2168 - Phosphoribosylglycinamide formyltransferase (NCBI), at 2,517,422 to 2,518,096 _A2168 Rru_A2169: Rru_A2169 - Nucleoside-diphosphate kinase (NCBI), at 2,518,196 to 2,518,618 _A2169 Rru_A2170: Rru_A2170 - ABC transporter component (NCBI), at 2,519,018 to 2,520,955 _A2170 Position (kb) 2517 2518 2519Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2516.537 kb on + strand, within Rru_A2167at 2516.679 kb on + strand, within Rru_A2167at 2516.802 kb on + strand, within Rru_A2167at 2516.802 kb on + strand, within Rru_A2167at 2516.817 kb on + strand, within Rru_A2167at 2517.048 kb on + strand, within Rru_A2167at 2517.104 kb on + strand, within Rru_A2167at 2518.197 kb on + strandat 2518.662 kb on - strandat 2518.662 kb on - strandat 2518.662 kb on - strandat 2518.947 kb on - strandat 2518.978 kb on + strandat 2518.979 kb on - strandat 2518.979 kb on - strandat 2518.979 kb on - strandat 2519.042 kb on + strandat 2519.086 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,516,537 + Rru_A2167 0.24 -5.2
2,516,679 + Rru_A2167 0.36 -2.4
2,516,802 + Rru_A2167 0.47 -4.0
2,516,802 + Rru_A2167 0.47 -3.5
2,516,817 + Rru_A2167 0.48 -0.9
2,517,048 + Rru_A2167 0.68 -2.5
2,517,104 + Rru_A2167 0.72 -0.2
2,518,197 + +0.8
2,518,662 - -1.8
2,518,662 - +1.8
2,518,662 - -2.8
2,518,947 - -1.2
2,518,978 + -1.1
2,518,979 - -1.9
2,518,979 - -2.5
2,518,979 - -3.0
2,519,042 + -2.0
2,519,086 + -0.1

Or see this region's nucleotide sequence