Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2150

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2149 and Rru_A2150 are separated by 182 nucleotidesRru_A2150 and Rru_A2151 are separated by 639 nucleotides Rru_A2149: Rru_A2149 - Ribonuclease E and G (NCBI), at 2,496,163 to 2,498,832 _A2149 Rru_A2150: Rru_A2150 - hypothetical protein (NCBI), at 2,499,015 to 2,499,413 _A2150 Rru_A2151: Rru_A2151 - Ribosomal protein S9 (NCBI), at 2,500,053 to 2,500,529 _A2151 Position (kb) 2499 2500Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2498.946 kb on + strandat 2498.946 kb on + strandat 2498.946 kb on + strandat 2498.946 kb on + strandat 2498.947 kb on - strandat 2498.947 kb on - strandat 2498.947 kb on - strandat 2498.947 kb on - strandat 2498.947 kb on - strandat 2498.947 kb on - strandat 2498.947 kb on - strandat 2498.947 kb on - strandat 2498.947 kb on - strandat 2498.947 kb on - strandat 2499.553 kb on + strandat 2499.553 kb on + strandat 2499.553 kb on + strandat 2499.553 kb on + strandat 2499.554 kb on - strandat 2499.554 kb on - strandat 2499.564 kb on + strandat 2499.564 kb on + strandat 2499.565 kb on - strandat 2499.608 kb on + strandat 2499.830 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,498,946 + -1.5
2,498,946 + -1.7
2,498,946 + -0.3
2,498,946 + -1.3
2,498,947 - +0.2
2,498,947 - -0.6
2,498,947 - -0.4
2,498,947 - -0.5
2,498,947 - -0.0
2,498,947 - -0.1
2,498,947 - +1.8
2,498,947 - +1.7
2,498,947 - +0.6
2,498,947 - -1.1
2,499,553 + +0.4
2,499,553 + +4.1
2,499,553 + -2.5
2,499,553 + +0.6
2,499,554 - -0.5
2,499,554 - +0.3
2,499,564 + +0.7
2,499,564 + -1.0
2,499,565 - +0.9
2,499,608 + -1.5
2,499,830 - -2.7

Or see this region's nucleotide sequence