Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2148

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2147 and Rru_A2148 are separated by 274 nucleotidesRru_A2148 and Rru_A2149 are separated by 707 nucleotides Rru_A2147: Rru_A2147 - Penicillin-binding protein 1A (NCBI), at 2,491,117 to 2,493,612 _A2147 Rru_A2148: Rru_A2148 - N-acetylmuramoyl-L-alanine amidase (NCBI), at 2,493,887 to 2,495,455 _A2148 Rru_A2149: Rru_A2149 - Ribonuclease E and G (NCBI), at 2,496,163 to 2,498,832 _A2149 Position (kb) 2493 2494 2495 2496Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2493.685 kb on - strandat 2493.742 kb on - strandat 2495.446 kb on - strandat 2495.446 kb on - strandat 2495.446 kb on - strandat 2495.446 kb on - strandat 2495.446 kb on - strandat 2495.479 kb on - strandat 2495.516 kb on - strandat 2495.535 kb on - strandat 2495.551 kb on - strandat 2496.037 kb on + strandat 2496.058 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,493,685 - +1.7
2,493,742 - -3.5
2,495,446 - -0.8
2,495,446 - +0.2
2,495,446 - +0.1
2,495,446 - +2.8
2,495,446 - +0.5
2,495,479 - -1.4
2,495,516 - -0.2
2,495,535 - -2.0
2,495,551 - -0.8
2,496,037 + +2.9
2,496,058 + +0.8

Or see this region's nucleotide sequence