Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2134

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A2133 and Rru_A2134 are separated by 173 nucleotidesRru_A2134 and Rru_A2135 are separated by 189 nucleotides Rru_A2133: Rru_A2133 - glycosyl transferase, group 2 family protein (NCBI), at 2,477,446 to 2,479,488 _A2133 Rru_A2134: Rru_A2134 - hypothetical protein (NCBI), at 2,479,662 to 2,480,141 _A2134 Rru_A2135: Rru_A2135 - Twin-arginine translocation pathway signal (NCBI), at 2,480,331 to 2,481,917 _A2135 Position (kb) 2479 2480 2481Strain fitness (log2 ratio) -2 -1 0 1 2at 2479.531 kb on - strandat 2479.533 kb on + strandat 2479.534 kb on - strandat 2479.534 kb on - strandat 2479.534 kb on - strandat 2479.583 kb on + strandat 2479.583 kb on + strandat 2479.583 kb on + strandat 2479.583 kb on + strandat 2479.583 kb on + strandat 2479.584 kb on - strandat 2479.584 kb on - strandat 2479.584 kb on - strandat 2479.584 kb on - strandat 2479.584 kb on - strandat 2479.584 kb on - strandat 2479.584 kb on - strandat 2479.593 kb on + strandat 2480.195 kb on - strandat 2480.198 kb on - strandat 2480.199 kb on + strandat 2480.200 kb on - strandat 2480.200 kb on - strandat 2480.200 kb on - strandat 2480.332 kb on + strandat 2480.332 kb on + strandat 2480.333 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
2,479,531 - -1.5
2,479,533 + -2.6
2,479,534 - -0.4
2,479,534 - +0.5
2,479,534 - -2.6
2,479,583 + -1.0
2,479,583 + +0.6
2,479,583 + -0.5
2,479,583 + -0.2
2,479,583 + -1.2
2,479,584 - -1.2
2,479,584 - +0.6
2,479,584 - -1.2
2,479,584 - +1.8
2,479,584 - +1.8
2,479,584 - +0.6
2,479,584 - +0.8
2,479,593 + -0.8
2,480,195 - -1.5
2,480,198 - +1.5
2,480,199 + +0.2
2,480,200 - -1.8
2,480,200 - +0.9
2,480,200 - -0.4
2,480,332 + -0.1
2,480,332 + -1.7
2,480,333 - +0.8

Or see this region's nucleotide sequence