Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2116

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A2115 and Rru_A2116 are separated by 41 nucleotidesRru_A2116 and Rru_A2117 are separated by 57 nucleotides Rru_A2115: Rru_A2115 - Phosphoglucomutase/phosphomannomutase (NCBI), at 2,454,473 to 2,456,107 _A2115 Rru_A2116: Rru_A2116 - UDP-glucose 6-dehydrogenase (NCBI), at 2,456,149 to 2,457,465 _A2116 Rru_A2117: Rru_A2117 - UTP--glucose-1-phosphate uridylyltransferase (NCBI), at 2,457,523 to 2,458,401 _A2117 Position (kb) 2456 2457 2458Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2455.332 kb on + strand, within Rru_A2115at 2455.332 kb on + strand, within Rru_A2115at 2455.332 kb on + strand, within Rru_A2115at 2455.332 kb on + strand, within Rru_A2115at 2455.332 kb on + strand, within Rru_A2115at 2455.332 kb on + strand, within Rru_A2115at 2455.332 kb on + strand, within Rru_A2115at 2455.440 kb on + strand, within Rru_A2115at 2455.545 kb on + strand, within Rru_A2115at 2455.722 kb on + strand, within Rru_A2115at 2455.722 kb on + strand, within Rru_A2115at 2455.722 kb on + strand, within Rru_A2115at 2455.722 kb on + strand, within Rru_A2115at 2455.722 kb on + strand, within Rru_A2115at 2455.722 kb on + strand, within Rru_A2115at 2455.723 kb on - strand, within Rru_A2115at 2455.723 kb on - strand, within Rru_A2115at 2455.723 kb on - strand, within Rru_A2115at 2455.723 kb on - strand, within Rru_A2115at 2455.759 kb on + strand, within Rru_A2115at 2455.760 kb on - strand, within Rru_A2115at 2456.004 kb on + strandat 2456.004 kb on + strandat 2456.004 kb on + strandat 2458.428 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
2,455,332 + Rru_A2115 0.53 -2.5
2,455,332 + Rru_A2115 0.53 -3.4
2,455,332 + Rru_A2115 0.53 -1.2
2,455,332 + Rru_A2115 0.53 -2.4
2,455,332 + Rru_A2115 0.53 -1.4
2,455,332 + Rru_A2115 0.53 -1.2
2,455,332 + Rru_A2115 0.53 -1.8
2,455,440 + Rru_A2115 0.59 -1.5
2,455,545 + Rru_A2115 0.66 -2.0
2,455,722 + Rru_A2115 0.76 -0.5
2,455,722 + Rru_A2115 0.76 +3.1
2,455,722 + Rru_A2115 0.76 -2.0
2,455,722 + Rru_A2115 0.76 -0.8
2,455,722 + Rru_A2115 0.76 -0.1
2,455,722 + Rru_A2115 0.76 -1.5
2,455,723 - Rru_A2115 0.76 -0.8
2,455,723 - Rru_A2115 0.76 -0.5
2,455,723 - Rru_A2115 0.76 -0.5
2,455,723 - Rru_A2115 0.76 -1.3
2,455,759 + Rru_A2115 0.79 +0.8
2,455,760 - Rru_A2115 0.79 +0.3
2,456,004 + +0.8
2,456,004 + -0.8
2,456,004 + -0.1
2,458,428 - -0.7

Or see this region's nucleotide sequence