Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2115 and Rru_A2116 are separated by 41 nucleotides Rru_A2116 and Rru_A2117 are separated by 57 nucleotides
Rru_A2115: Rru_A2115 - Phosphoglucomutase/phosphomannomutase (NCBI), at 2,454,473 to 2,456,107
_A2115
Rru_A2116: Rru_A2116 - UDP-glucose 6-dehydrogenase (NCBI), at 2,456,149 to 2,457,465
_A2116
Rru_A2117: Rru_A2117 - UTP--glucose-1-phosphate uridylyltransferase (NCBI), at 2,457,523 to 2,458,401
_A2117
Position (kb)
2456
2457
2458 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2455.332 kb on + strand, within Rru_A2115 at 2455.332 kb on + strand, within Rru_A2115 at 2455.332 kb on + strand, within Rru_A2115 at 2455.332 kb on + strand, within Rru_A2115 at 2455.332 kb on + strand, within Rru_A2115 at 2455.332 kb on + strand, within Rru_A2115 at 2455.332 kb on + strand, within Rru_A2115 at 2455.440 kb on + strand, within Rru_A2115 at 2455.545 kb on + strand, within Rru_A2115 at 2455.722 kb on + strand, within Rru_A2115 at 2455.722 kb on + strand, within Rru_A2115 at 2455.722 kb on + strand, within Rru_A2115 at 2455.722 kb on + strand, within Rru_A2115 at 2455.722 kb on + strand, within Rru_A2115 at 2455.722 kb on + strand, within Rru_A2115 at 2455.723 kb on - strand, within Rru_A2115 at 2455.723 kb on - strand, within Rru_A2115 at 2455.723 kb on - strand, within Rru_A2115 at 2455.723 kb on - strand, within Rru_A2115 at 2455.759 kb on + strand, within Rru_A2115 at 2455.760 kb on - strand, within Rru_A2115 at 2456.004 kb on + strand at 2456.004 kb on + strand at 2456.004 kb on + strand at 2458.428 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 2,455,332 + Rru_A2115 0.53 -2.5 2,455,332 + Rru_A2115 0.53 -3.4 2,455,332 + Rru_A2115 0.53 -1.2 2,455,332 + Rru_A2115 0.53 -2.4 2,455,332 + Rru_A2115 0.53 -1.4 2,455,332 + Rru_A2115 0.53 -1.2 2,455,332 + Rru_A2115 0.53 -1.8 2,455,440 + Rru_A2115 0.59 -1.5 2,455,545 + Rru_A2115 0.66 -2.0 2,455,722 + Rru_A2115 0.76 -0.5 2,455,722 + Rru_A2115 0.76 +3.1 2,455,722 + Rru_A2115 0.76 -2.0 2,455,722 + Rru_A2115 0.76 -0.8 2,455,722 + Rru_A2115 0.76 -0.1 2,455,722 + Rru_A2115 0.76 -1.5 2,455,723 - Rru_A2115 0.76 -0.8 2,455,723 - Rru_A2115 0.76 -0.5 2,455,723 - Rru_A2115 0.76 -0.5 2,455,723 - Rru_A2115 0.76 -1.3 2,455,759 + Rru_A2115 0.79 +0.8 2,455,760 - Rru_A2115 0.79 +0.3 2,456,004 + +0.8 2,456,004 + -0.8 2,456,004 + -0.1 2,458,428 - -0.7
Or see this region's nucleotide sequence