Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2031 and Rru_A2032 are separated by 99 nucleotides Rru_A2032 and Rru_A2033 are separated by 89 nucleotides
Rru_A2031: Rru_A2031 - Protein of unknown function UPF0075 (NCBI), at 2,343,502 to 2,344,629
_A2031
Rru_A2032: Rru_A2032 - Tyrosyl-tRNA synthetase, class Ib (NCBI), at 2,344,729 to 2,345,985
_A2032
Rru_A2033: Rru_A2033 - PAS/PAC Sensor Hybrid Histidine Kinase (NCBI), at 2,346,075 to 2,348,675
_A2033
Position (kb)
2344
2345
2346 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2343.923 kb on + strand, within Rru_A2031 at 2343.923 kb on + strand, within Rru_A2031 at 2343.924 kb on - strand, within Rru_A2031 at 2343.924 kb on - strand, within Rru_A2031 at 2343.924 kb on - strand, within Rru_A2031 at 2343.924 kb on - strand, within Rru_A2031 at 2344.162 kb on + strand, within Rru_A2031 at 2344.163 kb on - strand, within Rru_A2031 at 2344.163 kb on - strand, within Rru_A2031 at 2344.169 kb on + strand, within Rru_A2031 at 2344.491 kb on - strand, within Rru_A2031 at 2344.560 kb on + strand at 2346.024 kb on - strand at 2346.500 kb on + strand, within Rru_A2033 at 2346.500 kb on + strand, within Rru_A2033 at 2346.500 kb on + strand, within Rru_A2033 at 2346.500 kb on + strand, within Rru_A2033 at 2346.500 kb on + strand, within Rru_A2033 at 2346.501 kb on - strand, within Rru_A2033 at 2346.501 kb on - strand, within Rru_A2033 at 2346.501 kb on - strand, within Rru_A2033 at 2346.501 kb on - strand, within Rru_A2033 at 2346.501 kb on - strand, within Rru_A2033 at 2346.501 kb on - strand, within Rru_A2033 at 2346.501 kb on - strand, within Rru_A2033 at 2346.501 kb on - strand, within Rru_A2033 at 2346.501 kb on - strand, within Rru_A2033 at 2346.981 kb on + strand, within Rru_A2033 at 2346.981 kb on + strand, within Rru_A2033
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 2,343,923 + Rru_A2031 0.37 -1.2 2,343,923 + Rru_A2031 0.37 +0.8 2,343,924 - Rru_A2031 0.37 +3.2 2,343,924 - Rru_A2031 0.37 +0.0 2,343,924 - Rru_A2031 0.37 -0.2 2,343,924 - Rru_A2031 0.37 -1.8 2,344,162 + Rru_A2031 0.59 +0.2 2,344,163 - Rru_A2031 0.59 -0.1 2,344,163 - Rru_A2031 0.59 +1.2 2,344,169 + Rru_A2031 0.59 -2.4 2,344,491 - Rru_A2031 0.88 +0.8 2,344,560 + -0.8 2,346,024 - -0.2 2,346,500 + Rru_A2033 0.16 -2.0 2,346,500 + Rru_A2033 0.16 -2.5 2,346,500 + Rru_A2033 0.16 -0.2 2,346,500 + Rru_A2033 0.16 +0.7 2,346,500 + Rru_A2033 0.16 +1.3 2,346,501 - Rru_A2033 0.16 +0.5 2,346,501 - Rru_A2033 0.16 -3.4 2,346,501 - Rru_A2033 0.16 +0.2 2,346,501 - Rru_A2033 0.16 -2.4 2,346,501 - Rru_A2033 0.16 +0.8 2,346,501 - Rru_A2033 0.16 -3.5 2,346,501 - Rru_A2033 0.16 -0.5 2,346,501 - Rru_A2033 0.16 +2.3 2,346,501 - Rru_A2033 0.16 +0.6 2,346,981 + Rru_A2033 0.35 -3.8 2,346,981 + Rru_A2033 0.35 -2.5
Or see this region's nucleotide sequence