Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2032

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2031 and Rru_A2032 are separated by 99 nucleotidesRru_A2032 and Rru_A2033 are separated by 89 nucleotides Rru_A2031: Rru_A2031 - Protein of unknown function UPF0075 (NCBI), at 2,343,502 to 2,344,629 _A2031 Rru_A2032: Rru_A2032 - Tyrosyl-tRNA synthetase, class Ib (NCBI), at 2,344,729 to 2,345,985 _A2032 Rru_A2033: Rru_A2033 - PAS/PAC Sensor Hybrid Histidine Kinase (NCBI), at 2,346,075 to 2,348,675 _A2033 Position (kb) 2344 2345 2346Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2343.923 kb on + strand, within Rru_A2031at 2343.923 kb on + strand, within Rru_A2031at 2343.924 kb on - strand, within Rru_A2031at 2343.924 kb on - strand, within Rru_A2031at 2343.924 kb on - strand, within Rru_A2031at 2343.924 kb on - strand, within Rru_A2031at 2344.162 kb on + strand, within Rru_A2031at 2344.163 kb on - strand, within Rru_A2031at 2344.163 kb on - strand, within Rru_A2031at 2344.169 kb on + strand, within Rru_A2031at 2344.491 kb on - strand, within Rru_A2031at 2344.560 kb on + strandat 2346.024 kb on - strandat 2346.500 kb on + strand, within Rru_A2033at 2346.500 kb on + strand, within Rru_A2033at 2346.500 kb on + strand, within Rru_A2033at 2346.500 kb on + strand, within Rru_A2033at 2346.500 kb on + strand, within Rru_A2033at 2346.501 kb on - strand, within Rru_A2033at 2346.501 kb on - strand, within Rru_A2033at 2346.501 kb on - strand, within Rru_A2033at 2346.501 kb on - strand, within Rru_A2033at 2346.501 kb on - strand, within Rru_A2033at 2346.501 kb on - strand, within Rru_A2033at 2346.501 kb on - strand, within Rru_A2033at 2346.501 kb on - strand, within Rru_A2033at 2346.501 kb on - strand, within Rru_A2033at 2346.981 kb on + strand, within Rru_A2033at 2346.981 kb on + strand, within Rru_A2033

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,343,923 + Rru_A2031 0.37 -1.2
2,343,923 + Rru_A2031 0.37 +0.8
2,343,924 - Rru_A2031 0.37 +3.2
2,343,924 - Rru_A2031 0.37 +0.0
2,343,924 - Rru_A2031 0.37 -0.2
2,343,924 - Rru_A2031 0.37 -1.8
2,344,162 + Rru_A2031 0.59 +0.2
2,344,163 - Rru_A2031 0.59 -0.1
2,344,163 - Rru_A2031 0.59 +1.2
2,344,169 + Rru_A2031 0.59 -2.4
2,344,491 - Rru_A2031 0.88 +0.8
2,344,560 + -0.8
2,346,024 - -0.2
2,346,500 + Rru_A2033 0.16 -2.0
2,346,500 + Rru_A2033 0.16 -2.5
2,346,500 + Rru_A2033 0.16 -0.2
2,346,500 + Rru_A2033 0.16 +0.7
2,346,500 + Rru_A2033 0.16 +1.3
2,346,501 - Rru_A2033 0.16 +0.5
2,346,501 - Rru_A2033 0.16 -3.4
2,346,501 - Rru_A2033 0.16 +0.2
2,346,501 - Rru_A2033 0.16 -2.4
2,346,501 - Rru_A2033 0.16 +0.8
2,346,501 - Rru_A2033 0.16 -3.5
2,346,501 - Rru_A2033 0.16 -0.5
2,346,501 - Rru_A2033 0.16 +2.3
2,346,501 - Rru_A2033 0.16 +0.6
2,346,981 + Rru_A2033 0.35 -3.8
2,346,981 + Rru_A2033 0.35 -2.5

Or see this region's nucleotide sequence