Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2031

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2029 and Rru_A2030 are separated by 327 nucleotidesRru_A2030 and Rru_A2031 overlap by 49 nucleotidesRru_A2031 and Rru_A2032 are separated by 99 nucleotides Rru_A2029: Rru_A2029 - Serine O-acetyltransferase (NCBI), at 2,341,796 to 2,342,560 _A2029 Rru_A2030: Rru_A2030 - hypothetical protein (NCBI), at 2,342,888 to 2,343,550 _A2030 Rru_A2031: Rru_A2031 - Protein of unknown function UPF0075 (NCBI), at 2,343,502 to 2,344,629 _A2031 Rru_A2032: Rru_A2032 - Tyrosyl-tRNA synthetase, class Ib (NCBI), at 2,344,729 to 2,345,985 _A2032 Position (kb) 2343 2344 2345Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2342.699 kb on + strandat 2342.707 kb on + strandat 2342.726 kb on + strandat 2342.726 kb on + strandat 2342.806 kb on + strandat 2342.868 kb on + strandat 2342.868 kb on + strandat 2343.548 kb on + strandat 2343.923 kb on + strand, within Rru_A2031at 2343.923 kb on + strand, within Rru_A2031at 2343.924 kb on - strand, within Rru_A2031at 2343.924 kb on - strand, within Rru_A2031at 2343.924 kb on - strand, within Rru_A2031at 2343.924 kb on - strand, within Rru_A2031at 2344.162 kb on + strand, within Rru_A2031at 2344.163 kb on - strand, within Rru_A2031at 2344.163 kb on - strand, within Rru_A2031at 2344.169 kb on + strand, within Rru_A2031at 2344.491 kb on - strand, within Rru_A2031at 2344.560 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,342,699 + +0.8
2,342,707 + -1.2
2,342,726 + +0.3
2,342,726 + -1.8
2,342,806 + -2.4
2,342,868 + -1.7
2,342,868 + -1.9
2,343,548 + -3.1
2,343,923 + Rru_A2031 0.37 -1.2
2,343,923 + Rru_A2031 0.37 +0.8
2,343,924 - Rru_A2031 0.37 +3.2
2,343,924 - Rru_A2031 0.37 +0.0
2,343,924 - Rru_A2031 0.37 -0.2
2,343,924 - Rru_A2031 0.37 -1.8
2,344,162 + Rru_A2031 0.59 +0.2
2,344,163 - Rru_A2031 0.59 -0.1
2,344,163 - Rru_A2031 0.59 +1.2
2,344,169 + Rru_A2031 0.59 -2.4
2,344,491 - Rru_A2031 0.88 +0.8
2,344,560 + -0.8

Or see this region's nucleotide sequence