Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1995 and Rru_AR0037 are separated by 89 nucleotides Rru_AR0037 and Rru_A1996 are separated by 178 nucleotides Rru_A1996 and Rru_A1997 are separated by 32 nucleotides
Rru_A1995: Rru_A1995 - Divalent cation transporter (NCBI), at 2,304,404 to 2,305,834
_A1995
Rru_AR0037: Rru_AR0037 - tRNA-Leu (NCBI), at 2,305,924 to 2,306,010
_AR0037
Rru_A1996: Rru_A1996 - Lipoate-protein ligase B (NCBI), at 2,306,189 to 2,306,839
_A1996
Rru_A1997: Rru_A1997 - carboxylesterase family protein (NCBI), at 2,306,872 to 2,307,765
_A1997
Position (kb)
2305
2306
2307 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2304.934 kb on - strand, within Rru_A1995 at 2305.067 kb on + strand, within Rru_A1995 at 2305.068 kb on - strand, within Rru_A1995 at 2305.068 kb on - strand, within Rru_A1995 at 2305.233 kb on + strand, within Rru_A1995 at 2305.233 kb on + strand, within Rru_A1995 at 2305.233 kb on + strand, within Rru_A1995 at 2305.233 kb on + strand, within Rru_A1995 at 2305.233 kb on + strand, within Rru_A1995 at 2305.233 kb on + strand, within Rru_A1995 at 2305.233 kb on + strand, within Rru_A1995 at 2305.234 kb on - strand, within Rru_A1995 at 2305.234 kb on - strand, within Rru_A1995 at 2305.234 kb on - strand, within Rru_A1995 at 2305.234 kb on - strand, within Rru_A1995 at 2305.234 kb on - strand, within Rru_A1995 at 2305.234 kb on - strand, within Rru_A1995 at 2305.234 kb on - strand, within Rru_A1995 at 2305.234 kb on - strand, within Rru_A1995 at 2305.234 kb on - strand, within Rru_A1995 at 2305.278 kb on + strand, within Rru_A1995 at 2305.278 kb on + strand, within Rru_A1995 at 2305.279 kb on - strand, within Rru_A1995 at 2305.279 kb on - strand, within Rru_A1995 at 2305.305 kb on + strand, within Rru_A1995 at 2305.305 kb on + strand, within Rru_A1995 at 2305.305 kb on + strand, within Rru_A1995 at 2305.455 kb on + strand, within Rru_A1995 at 2305.455 kb on + strand, within Rru_A1995 at 2305.455 kb on + strand, within Rru_A1995 at 2305.455 kb on + strand, within Rru_A1995 at 2305.455 kb on + strand, within Rru_A1995 at 2305.455 kb on + strand, within Rru_A1995 at 2305.456 kb on - strand, within Rru_A1995 at 2305.456 kb on - strand, within Rru_A1995 at 2305.456 kb on - strand, within Rru_A1995 at 2305.456 kb on - strand, within Rru_A1995 at 2305.506 kb on + strand, within Rru_A1995 at 2305.507 kb on - strand, within Rru_A1995 at 2305.539 kb on + strand, within Rru_A1995 at 2305.539 kb on + strand, within Rru_A1995 at 2305.539 kb on + strand, within Rru_A1995 at 2305.539 kb on + strand, within Rru_A1995 at 2305.539 kb on + strand, within Rru_A1995 at 2305.539 kb on + strand, within Rru_A1995 at 2305.540 kb on - strand, within Rru_A1995 at 2305.540 kb on - strand, within Rru_A1995 at 2305.540 kb on - strand, within Rru_A1995 at 2305.651 kb on - strand, within Rru_A1995 at 2305.853 kb on + strand at 2305.854 kb on - strand at 2305.921 kb on + strand at 2306.031 kb on - strand at 2306.855 kb on + strand at 2306.855 kb on + strand at 2306.856 kb on - strand at 2306.856 kb on - strand at 2306.856 kb on - strand at 2306.856 kb on - strand at 2306.856 kb on - strand at 2306.856 kb on - strand at 2306.861 kb on + strand at 2306.862 kb on - strand at 2306.862 kb on - strand at 2306.862 kb on - strand at 2306.864 kb on + strand at 2306.864 kb on + strand at 2306.864 kb on + strand at 2306.864 kb on + strand at 2306.864 kb on + strand at 2306.865 kb on - strand at 2306.865 kb on - strand at 2306.866 kb on + strand at 2306.866 kb on + strand at 2306.866 kb on + strand at 2306.866 kb on + strand at 2306.866 kb on + strand at 2306.866 kb on + strand at 2306.867 kb on - strand at 2306.867 kb on - strand at 2306.867 kb on - strand at 2306.867 kb on - strand at 2306.940 kb on + strand at 2307.005 kb on - strand, within Rru_A1997 at 2307.005 kb on - strand, within Rru_A1997
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 2,304,934 - Rru_A1995 0.37 -1.5 2,305,067 + Rru_A1995 0.46 +2.7 2,305,068 - Rru_A1995 0.46 +1.4 2,305,068 - Rru_A1995 0.46 +2.1 2,305,233 + Rru_A1995 0.58 -2.6 2,305,233 + Rru_A1995 0.58 -0.5 2,305,233 + Rru_A1995 0.58 -0.4 2,305,233 + Rru_A1995 0.58 +2.0 2,305,233 + Rru_A1995 0.58 -1.0 2,305,233 + Rru_A1995 0.58 -0.4 2,305,233 + Rru_A1995 0.58 +0.5 2,305,234 - Rru_A1995 0.58 -1.2 2,305,234 - Rru_A1995 0.58 -0.2 2,305,234 - Rru_A1995 0.58 +3.1 2,305,234 - Rru_A1995 0.58 +1.1 2,305,234 - Rru_A1995 0.58 +1.3 2,305,234 - Rru_A1995 0.58 +0.2 2,305,234 - Rru_A1995 0.58 -1.0 2,305,234 - Rru_A1995 0.58 +0.4 2,305,234 - Rru_A1995 0.58 +0.8 2,305,278 + Rru_A1995 0.61 +1.2 2,305,278 + Rru_A1995 0.61 +2.3 2,305,279 - Rru_A1995 0.61 -2.1 2,305,279 - Rru_A1995 0.61 +1.8 2,305,305 + Rru_A1995 0.63 -0.7 2,305,305 + Rru_A1995 0.63 +0.2 2,305,305 + Rru_A1995 0.63 +1.8 2,305,455 + Rru_A1995 0.73 +2.6 2,305,455 + Rru_A1995 0.73 -0.3 2,305,455 + Rru_A1995 0.73 +1.8 2,305,455 + Rru_A1995 0.73 +0.2 2,305,455 + Rru_A1995 0.73 -2.5 2,305,455 + Rru_A1995 0.73 -0.2 2,305,456 - Rru_A1995 0.74 +0.8 2,305,456 - Rru_A1995 0.74 -3.2 2,305,456 - Rru_A1995 0.74 -0.5 2,305,456 - Rru_A1995 0.74 +2.8 2,305,506 + Rru_A1995 0.77 +2.1 2,305,507 - Rru_A1995 0.77 -1.2 2,305,539 + Rru_A1995 0.79 +0.3 2,305,539 + Rru_A1995 0.79 +0.4 2,305,539 + Rru_A1995 0.79 +1.4 2,305,539 + Rru_A1995 0.79 +0.2 2,305,539 + Rru_A1995 0.79 +0.4 2,305,539 + Rru_A1995 0.79 +3.4 2,305,540 - Rru_A1995 0.79 +3.8 2,305,540 - Rru_A1995 0.79 -0.5 2,305,540 - Rru_A1995 0.79 -2.2 2,305,651 - Rru_A1995 0.87 +1.5 2,305,853 + +0.4 2,305,854 - -1.8 2,305,921 + +1.5 2,306,031 - -2.5 2,306,855 + +1.8 2,306,855 + -0.1 2,306,856 - +0.2 2,306,856 - -3.0 2,306,856 - -1.8 2,306,856 - -1.4 2,306,856 - -0.4 2,306,856 - -1.0 2,306,861 + -1.1 2,306,862 - +0.4 2,306,862 - +0.8 2,306,862 - -0.8 2,306,864 + +2.8 2,306,864 + +0.6 2,306,864 + -0.6 2,306,864 + -2.0 2,306,864 + +1.2 2,306,865 - -1.5 2,306,865 - +0.2 2,306,866 + +2.4 2,306,866 + +2.4 2,306,866 + -1.7 2,306,866 + -0.4 2,306,866 + +0.6 2,306,866 + -1.3 2,306,867 - -1.1 2,306,867 - -3.9 2,306,867 - -2.5 2,306,867 - +1.2 2,306,940 + -0.0 2,307,005 - Rru_A1997 0.15 -0.1 2,307,005 - Rru_A1997 0.15 -2.9
Or see this region's nucleotide sequence