Strain Fitness in Rhodospirillum rubrum S1H around Rru_AR0037

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1995 and Rru_AR0037 are separated by 89 nucleotidesRru_AR0037 and Rru_A1996 are separated by 178 nucleotidesRru_A1996 and Rru_A1997 are separated by 32 nucleotides Rru_A1995: Rru_A1995 - Divalent cation transporter (NCBI), at 2,304,404 to 2,305,834 _A1995 Rru_AR0037: Rru_AR0037 - tRNA-Leu (NCBI), at 2,305,924 to 2,306,010 _AR0037 Rru_A1996: Rru_A1996 - Lipoate-protein ligase B (NCBI), at 2,306,189 to 2,306,839 _A1996 Rru_A1997: Rru_A1997 - carboxylesterase family protein (NCBI), at 2,306,872 to 2,307,765 _A1997 Position (kb) 2305 2306 2307Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2304.934 kb on - strand, within Rru_A1995at 2305.067 kb on + strand, within Rru_A1995at 2305.068 kb on - strand, within Rru_A1995at 2305.068 kb on - strand, within Rru_A1995at 2305.233 kb on + strand, within Rru_A1995at 2305.233 kb on + strand, within Rru_A1995at 2305.233 kb on + strand, within Rru_A1995at 2305.233 kb on + strand, within Rru_A1995at 2305.233 kb on + strand, within Rru_A1995at 2305.233 kb on + strand, within Rru_A1995at 2305.233 kb on + strand, within Rru_A1995at 2305.234 kb on - strand, within Rru_A1995at 2305.234 kb on - strand, within Rru_A1995at 2305.234 kb on - strand, within Rru_A1995at 2305.234 kb on - strand, within Rru_A1995at 2305.234 kb on - strand, within Rru_A1995at 2305.234 kb on - strand, within Rru_A1995at 2305.234 kb on - strand, within Rru_A1995at 2305.234 kb on - strand, within Rru_A1995at 2305.234 kb on - strand, within Rru_A1995at 2305.278 kb on + strand, within Rru_A1995at 2305.278 kb on + strand, within Rru_A1995at 2305.279 kb on - strand, within Rru_A1995at 2305.279 kb on - strand, within Rru_A1995at 2305.305 kb on + strand, within Rru_A1995at 2305.305 kb on + strand, within Rru_A1995at 2305.305 kb on + strand, within Rru_A1995at 2305.455 kb on + strand, within Rru_A1995at 2305.455 kb on + strand, within Rru_A1995at 2305.455 kb on + strand, within Rru_A1995at 2305.455 kb on + strand, within Rru_A1995at 2305.455 kb on + strand, within Rru_A1995at 2305.455 kb on + strand, within Rru_A1995at 2305.456 kb on - strand, within Rru_A1995at 2305.456 kb on - strand, within Rru_A1995at 2305.456 kb on - strand, within Rru_A1995at 2305.456 kb on - strand, within Rru_A1995at 2305.506 kb on + strand, within Rru_A1995at 2305.507 kb on - strand, within Rru_A1995at 2305.539 kb on + strand, within Rru_A1995at 2305.539 kb on + strand, within Rru_A1995at 2305.539 kb on + strand, within Rru_A1995at 2305.539 kb on + strand, within Rru_A1995at 2305.539 kb on + strand, within Rru_A1995at 2305.539 kb on + strand, within Rru_A1995at 2305.540 kb on - strand, within Rru_A1995at 2305.540 kb on - strand, within Rru_A1995at 2305.540 kb on - strand, within Rru_A1995at 2305.651 kb on - strand, within Rru_A1995at 2305.853 kb on + strandat 2305.854 kb on - strandat 2305.921 kb on + strandat 2306.031 kb on - strandat 2306.855 kb on + strandat 2306.855 kb on + strandat 2306.856 kb on - strandat 2306.856 kb on - strandat 2306.856 kb on - strandat 2306.856 kb on - strandat 2306.856 kb on - strandat 2306.856 kb on - strandat 2306.861 kb on + strandat 2306.862 kb on - strandat 2306.862 kb on - strandat 2306.862 kb on - strandat 2306.864 kb on + strandat 2306.864 kb on + strandat 2306.864 kb on + strandat 2306.864 kb on + strandat 2306.864 kb on + strandat 2306.865 kb on - strandat 2306.865 kb on - strandat 2306.866 kb on + strandat 2306.866 kb on + strandat 2306.866 kb on + strandat 2306.866 kb on + strandat 2306.866 kb on + strandat 2306.866 kb on + strandat 2306.867 kb on - strandat 2306.867 kb on - strandat 2306.867 kb on - strandat 2306.867 kb on - strandat 2306.940 kb on + strandat 2307.005 kb on - strand, within Rru_A1997at 2307.005 kb on - strand, within Rru_A1997

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,304,934 - Rru_A1995 0.37 -1.5
2,305,067 + Rru_A1995 0.46 +2.7
2,305,068 - Rru_A1995 0.46 +1.4
2,305,068 - Rru_A1995 0.46 +2.1
2,305,233 + Rru_A1995 0.58 -2.6
2,305,233 + Rru_A1995 0.58 -0.5
2,305,233 + Rru_A1995 0.58 -0.4
2,305,233 + Rru_A1995 0.58 +2.0
2,305,233 + Rru_A1995 0.58 -1.0
2,305,233 + Rru_A1995 0.58 -0.4
2,305,233 + Rru_A1995 0.58 +0.5
2,305,234 - Rru_A1995 0.58 -1.2
2,305,234 - Rru_A1995 0.58 -0.2
2,305,234 - Rru_A1995 0.58 +3.1
2,305,234 - Rru_A1995 0.58 +1.1
2,305,234 - Rru_A1995 0.58 +1.3
2,305,234 - Rru_A1995 0.58 +0.2
2,305,234 - Rru_A1995 0.58 -1.0
2,305,234 - Rru_A1995 0.58 +0.4
2,305,234 - Rru_A1995 0.58 +0.8
2,305,278 + Rru_A1995 0.61 +1.2
2,305,278 + Rru_A1995 0.61 +2.3
2,305,279 - Rru_A1995 0.61 -2.1
2,305,279 - Rru_A1995 0.61 +1.8
2,305,305 + Rru_A1995 0.63 -0.7
2,305,305 + Rru_A1995 0.63 +0.2
2,305,305 + Rru_A1995 0.63 +1.8
2,305,455 + Rru_A1995 0.73 +2.6
2,305,455 + Rru_A1995 0.73 -0.3
2,305,455 + Rru_A1995 0.73 +1.8
2,305,455 + Rru_A1995 0.73 +0.2
2,305,455 + Rru_A1995 0.73 -2.5
2,305,455 + Rru_A1995 0.73 -0.2
2,305,456 - Rru_A1995 0.74 +0.8
2,305,456 - Rru_A1995 0.74 -3.2
2,305,456 - Rru_A1995 0.74 -0.5
2,305,456 - Rru_A1995 0.74 +2.8
2,305,506 + Rru_A1995 0.77 +2.1
2,305,507 - Rru_A1995 0.77 -1.2
2,305,539 + Rru_A1995 0.79 +0.3
2,305,539 + Rru_A1995 0.79 +0.4
2,305,539 + Rru_A1995 0.79 +1.4
2,305,539 + Rru_A1995 0.79 +0.2
2,305,539 + Rru_A1995 0.79 +0.4
2,305,539 + Rru_A1995 0.79 +3.4
2,305,540 - Rru_A1995 0.79 +3.8
2,305,540 - Rru_A1995 0.79 -0.5
2,305,540 - Rru_A1995 0.79 -2.2
2,305,651 - Rru_A1995 0.87 +1.5
2,305,853 + +0.4
2,305,854 - -1.8
2,305,921 + +1.5
2,306,031 - -2.5
2,306,855 + +1.8
2,306,855 + -0.1
2,306,856 - +0.2
2,306,856 - -3.0
2,306,856 - -1.8
2,306,856 - -1.4
2,306,856 - -0.4
2,306,856 - -1.0
2,306,861 + -1.1
2,306,862 - +0.4
2,306,862 - +0.8
2,306,862 - -0.8
2,306,864 + +2.8
2,306,864 + +0.6
2,306,864 + -0.6
2,306,864 + -2.0
2,306,864 + +1.2
2,306,865 - -1.5
2,306,865 - +0.2
2,306,866 + +2.4
2,306,866 + +2.4
2,306,866 + -1.7
2,306,866 + -0.4
2,306,866 + +0.6
2,306,866 + -1.3
2,306,867 - -1.1
2,306,867 - -3.9
2,306,867 - -2.5
2,306,867 - +1.2
2,306,940 + -0.0
2,307,005 - Rru_A1997 0.15 -0.1
2,307,005 - Rru_A1997 0.15 -2.9

Or see this region's nucleotide sequence