Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1967 and Rru_A1968 are separated by 59 nucleotides Rru_A1968 and Rru_A1969 are separated by 87 nucleotides
Rru_A1967: Rru_A1967 - Peptidase S8 and S53, subtilisin, kexin, sedolisin (NCBI), at 2,274,402 to 2,275,793
_A1967
Rru_A1968: Rru_A1968 - Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain (NCBI), at 2,275,853 to 2,276,281
_A1968
Rru_A1969: Rru_A1969 - Esterase, PHB depolymerase (NCBI), at 2,276,369 to 2,277,490
_A1969
Position (kb)
2275
2276
2277 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2275.142 kb on + strand, within Rru_A1967 at 2275.143 kb on - strand, within Rru_A1967 at 2275.143 kb on - strand, within Rru_A1967 at 2275.143 kb on - strand, within Rru_A1967 at 2275.152 kb on + strand, within Rru_A1967 at 2275.152 kb on + strand, within Rru_A1967 at 2275.152 kb on + strand, within Rru_A1967 at 2275.153 kb on - strand, within Rru_A1967 at 2275.270 kb on - strand, within Rru_A1967 at 2275.270 kb on - strand, within Rru_A1967 at 2275.360 kb on - strand, within Rru_A1967 at 2275.435 kb on - strand, within Rru_A1967 at 2275.435 kb on - strand, within Rru_A1967 at 2275.435 kb on - strand, within Rru_A1967 at 2275.494 kb on + strand, within Rru_A1967 at 2275.870 kb on - strand at 2275.959 kb on + strand, within Rru_A1968 at 2275.959 kb on + strand, within Rru_A1968 at 2275.959 kb on + strand, within Rru_A1968 at 2275.959 kb on + strand, within Rru_A1968 at 2275.959 kb on + strand, within Rru_A1968 at 2275.960 kb on - strand, within Rru_A1968 at 2275.960 kb on - strand, within Rru_A1968 at 2275.976 kb on + strand, within Rru_A1968 at 2275.977 kb on - strand, within Rru_A1968 at 2275.977 kb on - strand, within Rru_A1968 at 2275.977 kb on - strand, within Rru_A1968 at 2276.675 kb on + strand, within Rru_A1969 at 2276.969 kb on + strand, within Rru_A1969 at 2276.970 kb on - strand, within Rru_A1969 at 2276.970 kb on - strand, within Rru_A1969 at 2277.023 kb on + strand, within Rru_A1969
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 2,275,142 + Rru_A1967 0.53 -0.2 2,275,143 - Rru_A1967 0.53 +0.8 2,275,143 - Rru_A1967 0.53 +0.1 2,275,143 - Rru_A1967 0.53 -1.0 2,275,152 + Rru_A1967 0.54 -2.7 2,275,152 + Rru_A1967 0.54 +0.6 2,275,152 + Rru_A1967 0.54 -1.7 2,275,153 - Rru_A1967 0.54 -0.9 2,275,270 - Rru_A1967 0.62 +0.9 2,275,270 - Rru_A1967 0.62 +1.5 2,275,360 - Rru_A1967 0.69 -2.3 2,275,435 - Rru_A1967 0.74 -2.7 2,275,435 - Rru_A1967 0.74 -0.8 2,275,435 - Rru_A1967 0.74 -1.2 2,275,494 + Rru_A1967 0.78 +0.2 2,275,870 - -1.6 2,275,959 + Rru_A1968 0.25 -0.2 2,275,959 + Rru_A1968 0.25 -1.7 2,275,959 + Rru_A1968 0.25 -1.4 2,275,959 + Rru_A1968 0.25 +3.0 2,275,959 + Rru_A1968 0.25 -1.7 2,275,960 - Rru_A1968 0.25 -1.6 2,275,960 - Rru_A1968 0.25 -0.4 2,275,976 + Rru_A1968 0.29 +0.7 2,275,977 - Rru_A1968 0.29 -2.0 2,275,977 - Rru_A1968 0.29 +1.9 2,275,977 - Rru_A1968 0.29 +0.9 2,276,675 + Rru_A1969 0.27 -1.5 2,276,969 + Rru_A1969 0.53 -0.8 2,276,970 - Rru_A1969 0.54 -0.0 2,276,970 - Rru_A1969 0.54 +0.6 2,277,023 + Rru_A1969 0.58 +0.2
Or see this region's nucleotide sequence