Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1931

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1929 and Rru_A1930 overlap by 4 nucleotidesRru_A1930 and Rru_A1931 overlap by 20 nucleotidesRru_A1931 and Rru_A1932 are separated by 2 nucleotidesRru_A1932 and Rru_A1933 are separated by 32 nucleotides Rru_A1929: Rru_A1929 - Phosphoadenosine phosphosulfate reductase (NCBI), at 2,235,551 to 2,236,279 _A1929 Rru_A1930: Rru_A1930 - Uncharacterized conserved protein UCP030820 (NCBI), at 2,236,276 to 2,236,812 _A1930 Rru_A1931: Rru_A1931 - Ferredoxin--nitrite reductase (NCBI), at 2,236,793 to 2,238,463 _A1931 Rru_A1932: Rru_A1932 - hypothetical protein (NCBI), at 2,238,466 to 2,238,798 _A1932 Rru_A1933: Rru_A1933 - Uroporphyrin-III C-methyltransferase (NCBI), at 2,238,831 to 2,240,330 _A1933 Position (kb) 2236 2237 2238 2239Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2239.148 kb on - strand, within Rru_A1933at 2239.148 kb on - strand, within Rru_A1933at 2239.148 kb on - strand, within Rru_A1933

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,239,148 - Rru_A1933 0.21 -3.7
2,239,148 - Rru_A1933 0.21 -1.0
2,239,148 - Rru_A1933 0.21 +2.3

Or see this region's nucleotide sequence