Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1888

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1887 and Rru_A1888 are separated by 134 nucleotidesRru_A1888 and Rru_A1889 are separated by 236 nucleotides Rru_A1887: Rru_A1887 - CTP synthase (NCBI), at 2,185,815 to 2,187,443 _A1887 Rru_A1888: Rru_A1888 - Preprotein translocase SecG subunit (NCBI), at 2,187,578 to 2,188,018 _A1888 Rru_A1889: Rru_A1889 - Triosephosphate isomerase (NCBI), at 2,188,255 to 2,189,013 _A1889 Position (kb) 2187 2188 2189Strain fitness (log2 ratio) -1 0 1at 2188.190 kb on - strandat 2188.779 kb on + strand, within Rru_A1889

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,188,190 - +1.4
2,188,779 + Rru_A1889 0.69 -0.4

Or see this region's nucleotide sequence