Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1887

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A1885 and Rru_A1886 are separated by 17 nucleotidesRru_A1886 and Rru_A1887 are separated by 65 nucleotidesRru_A1887 and Rru_A1888 are separated by 134 nucleotidesRru_A1888 and Rru_A1889 are separated by 236 nucleotides Rru_A1885: Rru_A1885 - Phosphopyruvate hydratase (NCBI), at 2,183,612 to 2,184,889 _A1885 Rru_A1886: Rru_A1886 - 2-dehydro-3-deoxyphosphooctonate aldolase (NCBI), at 2,184,907 to 2,185,749 _A1886 Rru_A1887: Rru_A1887 - CTP synthase (NCBI), at 2,185,815 to 2,187,443 _A1887 Rru_A1888: Rru_A1888 - Preprotein translocase SecG subunit (NCBI), at 2,187,578 to 2,188,018 _A1888 Rru_A1889: Rru_A1889 - Triosephosphate isomerase (NCBI), at 2,188,255 to 2,189,013 _A1889 Position (kb) 2185 2186 2187 2188Strain fitness (log2 ratio) -1 0 1at 2188.190 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
2,188,190 - +1.4

Or see this region's nucleotide sequence