Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1881

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1880 and Rru_A1881 are separated by 22 nucleotidesRru_A1881 and Rru_A1882 are separated by 367 nucleotides Rru_A1880: Rru_A1880 - Pyruvate dehydrogenase beta subunit (NCBI), at 2,177,890 to 2,179,296 _A1880 Rru_A1881: Rru_A1881 - Pyruvate dehydrogenase (lipoamide) (NCBI), at 2,179,319 to 2,180,329 _A1881 Rru_A1882: Rru_A1882 - Septum formation initiator (NCBI), at 2,180,697 to 2,181,020 _A1882 Position (kb) 2179 2180 2181Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2180.572 kb on - strandat 2181.098 kb on + strandat 2181.099 kb on - strandat 2181.278 kb on + strandat 2181.278 kb on + strandat 2181.278 kb on + strandat 2181.278 kb on + strandat 2181.278 kb on + strandat 2181.279 kb on - strandat 2181.279 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,180,572 - +0.2
2,181,098 + -2.0
2,181,099 - +1.7
2,181,278 + -2.1
2,181,278 + +0.8
2,181,278 + -3.8
2,181,278 + +1.1
2,181,278 + +0.7
2,181,279 - -0.8
2,181,279 - +1.8

Or see this region's nucleotide sequence