Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1877

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1875 and Rru_A1876 overlap by 22 nucleotidesRru_A1876 and Rru_A1877 are separated by 11 nucleotidesRru_A1877 and Rru_A1878 are separated by 7 nucleotides Rru_A1875: Rru_A1875 - Multi-sensor Signal Transduction Histidine Kinase (NCBI), at 2,172,205 to 2,173,710 _A1875 Rru_A1876: Rru_A1876 - cyclase/dehydrase (NCBI), at 2,173,689 to 2,174,132 _A1876 Rru_A1877: Rru_A1877 - Lipoate synthase (NCBI), at 2,174,144 to 2,175,088 _A1877 Rru_A1878: Rru_A1878 - Dihydrolipoamide dehydrogenase (NCBI), at 2,175,096 to 2,176,496 _A1878 Position (kb) 2174 2175 2176Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2173.252 kb on - strand, within Rru_A1875at 2173.318 kb on + strand, within Rru_A1875at 2173.319 kb on - strand, within Rru_A1875at 2173.319 kb on - strand, within Rru_A1875at 2173.319 kb on - strand, within Rru_A1875at 2173.474 kb on + strand, within Rru_A1875at 2173.474 kb on + strand, within Rru_A1875at 2173.475 kb on - strand, within Rru_A1875at 2173.475 kb on - strand, within Rru_A1875at 2173.475 kb on - strand, within Rru_A1875

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,173,252 - Rru_A1875 0.70 +0.7
2,173,318 + Rru_A1875 0.74 +1.4
2,173,319 - Rru_A1875 0.74 +0.3
2,173,319 - Rru_A1875 0.74 -3.4
2,173,319 - Rru_A1875 0.74 +2.5
2,173,474 + Rru_A1875 0.84 +3.3
2,173,474 + Rru_A1875 0.84 +0.5
2,173,475 - Rru_A1875 0.84 -0.6
2,173,475 - Rru_A1875 0.84 -2.7
2,173,475 - Rru_A1875 0.84 -1.4

Or see this region's nucleotide sequence