Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1852

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1851 and Rru_A1852 are separated by 212 nucleotidesRru_A1852 and Rru_A1853 are separated by 93 nucleotidesRru_A1853 and Rru_A1854 are separated by 133 nucleotides Rru_A1851: Rru_A1851 - GTP-binding protein Era (NCBI), at 2,149,790 to 2,150,719 _A1851 Rru_A1852: Rru_A1852 - Ribonuclease III (NCBI), at 2,150,932 to 2,151,597 _A1852 Rru_A1853: Rru_A1853 - Peptidase S26A, signal peptidase I (NCBI), at 2,151,691 to 2,152,428 _A1853 Rru_A1854: Rru_A1854 - Pyridoxal phosphate biosynthetic protein PdxJ (NCBI), at 2,152,562 to 2,153,311 _A1854 Position (kb) 2150 2151 2152Strain fitness (log2 ratio) -2 -1 0 1 2at 2150.399 kb on - strand, within Rru_A1851at 2150.399 kb on - strand, within Rru_A1851at 2150.870 kb on + strandat 2150.870 kb on + strandat 2150.871 kb on - strandat 2150.871 kb on - strandat 2151.428 kb on + strand, within Rru_A1852at 2151.645 kb on - strandat 2151.645 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,150,399 - Rru_A1851 0.65 +1.8
2,150,399 - Rru_A1851 0.65 +0.8
2,150,870 + -0.2
2,150,870 + -0.5
2,150,871 - +1.8
2,150,871 - -2.4
2,151,428 + Rru_A1852 0.74 +1.8
2,151,645 - +0.8
2,151,645 - -2.0

Or see this region's nucleotide sequence