Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1824

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A1823 and Rru_A1824 overlap by 8 nucleotidesRru_A1824 and Rru_A1825 are separated by 22 nucleotides Rru_A1823: Rru_A1823 - 3,4-Dihydroxy-2-butanone 4-phosphate synthase (NCBI), at 2,121,822 to 2,122,955 _A1823 Rru_A1824: Rru_A1824 - Lumazine-binding protein (NCBI), at 2,122,948 to 2,123,538 _A1824 Rru_A1825: Rru_A1825 - bifunctional deaminase-reductase (NCBI), at 2,123,561 to 2,124,664 _A1825 Position (kb) 2122 2123 2124Strain fitness (log2 ratio) -2 -1 0 1at 2122.225 kb on + strand, within Rru_A1823at 2122.226 kb on - strand, within Rru_A1823at 2122.226 kb on - strand, within Rru_A1823at 2122.244 kb on - strand, within Rru_A1823at 2122.244 kb on - strand, within Rru_A1823at 2122.244 kb on - strand, within Rru_A1823at 2122.244 kb on - strand, within Rru_A1823at 2122.244 kb on - strand, within Rru_A1823at 2122.244 kb on - strand, within Rru_A1823at 2122.244 kb on - strand, within Rru_A1823at 2123.550 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
2,122,225 + Rru_A1823 0.36 +0.2
2,122,226 - Rru_A1823 0.36 -1.0
2,122,226 - Rru_A1823 0.36 -0.3
2,122,244 - Rru_A1823 0.37 +0.5
2,122,244 - Rru_A1823 0.37 +1.0
2,122,244 - Rru_A1823 0.37 -1.5
2,122,244 - Rru_A1823 0.37 -0.7
2,122,244 - Rru_A1823 0.37 -1.3
2,122,244 - Rru_A1823 0.37 -0.7
2,122,244 - Rru_A1823 0.37 -1.8
2,123,550 - +0.7

Or see this region's nucleotide sequence