Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1779

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1778 and Rru_A1779 overlap by 1 nucleotidesRru_A1779 and Rru_A1780 overlap by 4 nucleotides Rru_A1778: Rru_A1778 - hypothetical protein (NCBI), at 2,069,010 to 2,070,080 _A1778 Rru_A1779: Rru_A1779 - Arginine--tRNA ligase (NCBI), at 2,070,080 to 2,071,858 _A1779 Rru_A1780: Rru_A1780 - Deoxyguanosinetriphosphate triphosphohydrolase (NCBI), at 2,071,855 to 2,073,051 _A1780 Position (kb) 2070 2071 2072Strain fitness (log2 ratio) -3 -2 -1 0 1at 2071.929 kb on - strandat 2071.929 kb on - strandat 2072.413 kb on - strand, within Rru_A1780at 2072.414 kb on + strand, within Rru_A1780at 2072.414 kb on + strand, within Rru_A1780at 2072.414 kb on + strand, within Rru_A1780at 2072.415 kb on - strand, within Rru_A1780at 2072.415 kb on - strand, within Rru_A1780at 2072.495 kb on + strand, within Rru_A1780at 2072.495 kb on + strand, within Rru_A1780at 2072.495 kb on + strand, within Rru_A1780at 2072.496 kb on - strand, within Rru_A1780at 2072.496 kb on - strand, within Rru_A1780at 2072.619 kb on - strand, within Rru_A1780at 2072.662 kb on - strand, within Rru_A1780at 2072.678 kb on + strand, within Rru_A1780at 2072.678 kb on + strand, within Rru_A1780at 2072.678 kb on + strand, within Rru_A1780at 2072.679 kb on - strand, within Rru_A1780at 2072.830 kb on - strand, within Rru_A1780at 2072.850 kb on - strand, within Rru_A1780

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,071,929 - -1.0
2,071,929 - -0.2
2,072,413 - Rru_A1780 0.47 -1.6
2,072,414 + Rru_A1780 0.47 +0.3
2,072,414 + Rru_A1780 0.47 +1.2
2,072,414 + Rru_A1780 0.47 +0.4
2,072,415 - Rru_A1780 0.47 -1.4
2,072,415 - Rru_A1780 0.47 +0.2
2,072,495 + Rru_A1780 0.53 +1.2
2,072,495 + Rru_A1780 0.53 -2.0
2,072,495 + Rru_A1780 0.53 +0.5
2,072,496 - Rru_A1780 0.54 -1.3
2,072,496 - Rru_A1780 0.54 -2.1
2,072,619 - Rru_A1780 0.64 -1.9
2,072,662 - Rru_A1780 0.67 -1.3
2,072,678 + Rru_A1780 0.69 +0.0
2,072,678 + Rru_A1780 0.69 +0.3
2,072,678 + Rru_A1780 0.69 -3.1
2,072,679 - Rru_A1780 0.69 +0.5
2,072,830 - Rru_A1780 0.81 -1.8
2,072,850 - Rru_A1780 0.83 -1.2

Or see this region's nucleotide sequence