Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1778

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A1777 and Rru_A1778 overlap by 11 nucleotidesRru_A1778 and Rru_A1779 overlap by 1 nucleotides Rru_A1777: Rru_A1777 - Beta-N-acetylhexosaminidase (NCBI), at 2,068,001 to 2,069,020 _A1777 Rru_A1778: Rru_A1778 - hypothetical protein (NCBI), at 2,069,010 to 2,070,080 _A1778 Rru_A1779: Rru_A1779 - Arginine--tRNA ligase (NCBI), at 2,070,080 to 2,071,858 _A1779 Position (kb) 2069 2070 2071Strain fitness (log2 ratio) -3 -2 -1 0 1at 2068.048 kb on - strandat 2068.048 kb on - strandat 2068.048 kb on - strandat 2068.351 kb on - strand, within Rru_A1777at 2068.351 kb on - strand, within Rru_A1777at 2068.351 kb on - strand, within Rru_A1777at 2068.358 kb on - strand, within Rru_A1777at 2068.495 kb on + strand, within Rru_A1777at 2068.495 kb on + strand, within Rru_A1777at 2068.495 kb on + strand, within Rru_A1777at 2068.496 kb on - strand, within Rru_A1777at 2068.496 kb on - strand, within Rru_A1777at 2068.496 kb on - strand, within Rru_A1777at 2068.496 kb on - strand, within Rru_A1777at 2068.496 kb on - strand, within Rru_A1777at 2068.585 kb on - strand, within Rru_A1777at 2068.738 kb on - strand, within Rru_A1777at 2068.967 kb on - strandat 2068.967 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
2,068,048 - -3.7
2,068,048 - -2.4
2,068,048 - +0.2
2,068,351 - Rru_A1777 0.34 -1.2
2,068,351 - Rru_A1777 0.34 -2.4
2,068,351 - Rru_A1777 0.34 -1.6
2,068,358 - Rru_A1777 0.35 -0.6
2,068,495 + Rru_A1777 0.48 -1.6
2,068,495 + Rru_A1777 0.48 -0.6
2,068,495 + Rru_A1777 0.48 -1.0
2,068,496 - Rru_A1777 0.49 -0.8
2,068,496 - Rru_A1777 0.49 -3.2
2,068,496 - Rru_A1777 0.49 -1.7
2,068,496 - Rru_A1777 0.49 -0.8
2,068,496 - Rru_A1777 0.49 -1.6
2,068,585 - Rru_A1777 0.57 -0.6
2,068,738 - Rru_A1777 0.72 -1.9
2,068,967 - -1.6
2,068,967 - -3.0

Or see this region's nucleotide sequence