Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1759

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1757 and Rru_A1758 are separated by 328 nucleotidesRru_A1758 and Rru_A1759 are separated by 210 nucleotidesRru_A1759 and Rru_A1760 are separated by 96 nucleotidesRru_A1760 and Rru_A1761 are separated by 150 nucleotides Rru_A1757: Rru_A1757 - Gid protein (NCBI), at 2,050,135 to 2,051,583 _A1757 Rru_A1758: Rru_A1758 - hypothetical protein (NCBI), at 2,051,912 to 2,052,130 _A1758 Rru_A1759: Rru_A1759 - putative phytoene synthase protein (NCBI), at 2,052,341 to 2,053,189 _A1759 Rru_A1760: Rru_A1760 - Superoxide dismutase (NCBI), at 2,053,286 to 2,053,969 _A1760 Rru_A1761: Rru_A1761 - GCN5-related N-acetyltransferase (NCBI), at 2,054,120 to 2,054,704 _A1761 Position (kb) 2052 2053 2054Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2051.658 kb on + strandat 2051.782 kb on + strandat 2051.783 kb on - strandat 2051.783 kb on - strandat 2051.783 kb on - strandat 2051.868 kb on - strandat 2051.891 kb on + strandat 2051.891 kb on + strandat 2051.891 kb on + strandat 2051.891 kb on + strandat 2051.891 kb on + strandat 2051.891 kb on + strandat 2051.891 kb on + strandat 2051.892 kb on - strandat 2051.892 kb on - strandat 2052.082 kb on + strand, within Rru_A1758at 2052.098 kb on - strand, within Rru_A1758at 2052.098 kb on - strand, within Rru_A1758at 2052.222 kb on - strandat 2052.279 kb on + strandat 2053.222 kb on - strandat 2053.294 kb on + strandat 2054.109 kb on + strandat 2054.109 kb on + strandat 2054.109 kb on + strandat 2054.109 kb on + strandat 2054.109 kb on + strandat 2054.110 kb on - strandat 2054.110 kb on - strandat 2054.110 kb on - strandat 2054.110 kb on - strandat 2054.110 kb on - strandat 2054.119 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,051,658 + -0.6
2,051,782 + +1.2
2,051,783 - -0.0
2,051,783 - +1.7
2,051,783 - +0.2
2,051,868 - +0.6
2,051,891 + +0.3
2,051,891 + -2.8
2,051,891 + +2.0
2,051,891 + +1.2
2,051,891 + -2.7
2,051,891 + +1.8
2,051,891 + +1.8
2,051,892 - -1.8
2,051,892 - +1.8
2,052,082 + Rru_A1758 0.78 +1.7
2,052,098 - Rru_A1758 0.85 -1.0
2,052,098 - Rru_A1758 0.85 -1.9
2,052,222 - +0.2
2,052,279 + -0.2
2,053,222 - -1.6
2,053,294 + +1.8
2,054,109 + +3.2
2,054,109 + -1.8
2,054,109 + -0.8
2,054,109 + -1.9
2,054,109 + +1.9
2,054,110 - -2.8
2,054,110 - -2.0
2,054,110 - +0.4
2,054,110 - -0.2
2,054,110 - -1.9
2,054,119 + -0.6

Or see this region's nucleotide sequence