Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1755

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A1753 and Rru_A1754 overlap by 4 nucleotidesRru_A1754 and Rru_A1755 are separated by 225 nucleotidesRru_A1755 and Rru_A1756 are separated by 17 nucleotidesRru_A1756 and Rru_A1757 are separated by 189 nucleotides Rru_A1753: Rru_A1753 - High-affinity nickel-transporter (NCBI), at 2,047,212 to 2,048,201 _A1753 Rru_A1754: Rru_A1754 - hypothetical protein (NCBI), at 2,048,198 to 2,048,848 _A1754 Rru_A1755: Rru_A1755 - hypothetical protein (NCBI), at 2,049,074 to 2,049,508 _A1755 Rru_A1756: Rru_A1756 - hypothetical protein (NCBI), at 2,049,526 to 2,049,945 _A1756 Rru_A1757: Rru_A1757 - Gid protein (NCBI), at 2,050,135 to 2,051,583 _A1757 Position (kb) 2049 2050Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2048.400 kb on + strand, within Rru_A1754at 2048.401 kb on - strand, within Rru_A1754at 2048.401 kb on - strand, within Rru_A1754at 2048.401 kb on - strand, within Rru_A1754at 2048.401 kb on - strand, within Rru_A1754at 2048.403 kb on + strand, within Rru_A1754at 2048.404 kb on - strand, within Rru_A1754at 2048.404 kb on - strand, within Rru_A1754at 2048.404 kb on - strand, within Rru_A1754at 2048.404 kb on - strand, within Rru_A1754at 2048.416 kb on - strand, within Rru_A1754at 2048.577 kb on + strand, within Rru_A1754at 2048.578 kb on - strand, within Rru_A1754at 2048.663 kb on - strand, within Rru_A1754at 2048.664 kb on + strand, within Rru_A1754at 2048.665 kb on - strand, within Rru_A1754at 2048.680 kb on - strand, within Rru_A1754at 2048.680 kb on - strand, within Rru_A1754at 2048.689 kb on - strand, within Rru_A1754at 2048.835 kb on - strandat 2048.935 kb on - strandat 2048.943 kb on - strandat 2048.943 kb on - strandat 2050.094 kb on - strandat 2050.099 kb on + strandat 2050.100 kb on - strandat 2050.100 kb on - strandat 2050.255 kb on - strandat 2050.255 kb on - strandat 2050.327 kb on + strand, within Rru_A1757at 2050.327 kb on + strand, within Rru_A1757at 2050.327 kb on + strand, within Rru_A1757at 2050.327 kb on + strand, within Rru_A1757at 2050.327 kb on + strand, within Rru_A1757at 2050.327 kb on + strand, within Rru_A1757at 2050.327 kb on + strand, within Rru_A1757at 2050.328 kb on - strand, within Rru_A1757at 2050.328 kb on - strand, within Rru_A1757at 2050.329 kb on + strand, within Rru_A1757at 2050.329 kb on + strand, within Rru_A1757at 2050.330 kb on - strand, within Rru_A1757

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
2,048,400 + Rru_A1754 0.31 +3.4
2,048,401 - Rru_A1754 0.31 -2.1
2,048,401 - Rru_A1754 0.31 +0.8
2,048,401 - Rru_A1754 0.31 +1.3
2,048,401 - Rru_A1754 0.31 +0.4
2,048,403 + Rru_A1754 0.31 -2.5
2,048,404 - Rru_A1754 0.32 +0.0
2,048,404 - Rru_A1754 0.32 -0.6
2,048,404 - Rru_A1754 0.32 -0.7
2,048,404 - Rru_A1754 0.32 -1.0
2,048,416 - Rru_A1754 0.33 -0.0
2,048,577 + Rru_A1754 0.58 -3.0
2,048,578 - Rru_A1754 0.58 -1.2
2,048,663 - Rru_A1754 0.71 +0.5
2,048,664 + Rru_A1754 0.72 -1.7
2,048,665 - Rru_A1754 0.72 -1.9
2,048,680 - Rru_A1754 0.74 -1.0
2,048,680 - Rru_A1754 0.74 -2.7
2,048,689 - Rru_A1754 0.75 +0.8
2,048,835 - +1.8
2,048,935 - -1.1
2,048,943 - -2.6
2,048,943 - -0.6
2,050,094 - -1.8
2,050,099 + -0.7
2,050,100 - +1.3
2,050,100 - -1.0
2,050,255 - -0.0
2,050,255 - -0.1
2,050,327 + Rru_A1757 0.13 -3.6
2,050,327 + Rru_A1757 0.13 -4.5
2,050,327 + Rru_A1757 0.13 +0.4
2,050,327 + Rru_A1757 0.13 -2.8
2,050,327 + Rru_A1757 0.13 +0.8
2,050,327 + Rru_A1757 0.13 -1.9
2,050,327 + Rru_A1757 0.13 -1.0
2,050,328 - Rru_A1757 0.13 -0.9
2,050,328 - Rru_A1757 0.13 -2.6
2,050,329 + Rru_A1757 0.13 +1.3
2,050,329 + Rru_A1757 0.13 +0.2
2,050,330 - Rru_A1757 0.13 -2.0

Or see this region's nucleotide sequence