Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1744

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1742 and Rru_A1743 are separated by 96 nucleotidesRru_A1743 and Rru_A1744 overlap by 14 nucleotidesRru_A1744 and Rru_A1745 are separated by 305 nucleotides Rru_A1742: Rru_A1742 - Peptidylprolyl isomerase (NCBI), at 2,033,249 to 2,033,755 _A1742 Rru_A1743: Rru_A1743 - Coenzyme A biosynthesis protein (NCBI), at 2,033,852 to 2,034,370 _A1743 Rru_A1744: Rru_A1744 - DNA gyrase, subunit A (NCBI), at 2,034,357 to 2,037,188 _A1744 Rru_A1745: Rru_A1745 - Single-strand binding protein (NCBI), at 2,037,494 to 2,038,051 _A1745 Position (kb) 2034 2035 2036 2037 2038Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2033.382 kb on + strand, within Rru_A1742at 2033.382 kb on + strand, within Rru_A1742at 2033.382 kb on + strand, within Rru_A1742at 2033.383 kb on - strand, within Rru_A1742at 2033.383 kb on - strand, within Rru_A1742at 2033.383 kb on - strand, within Rru_A1742at 2033.715 kb on + strandat 2033.716 kb on - strandat 2033.716 kb on - strandat 2033.716 kb on - strandat 2033.778 kb on - strandat 2033.787 kb on - strandat 2033.787 kb on - strandat 2033.787 kb on - strandat 2033.809 kb on + strandat 2033.810 kb on - strandat 2037.495 kb on + strandat 2037.496 kb on - strandat 2038.146 kb on - strandat 2038.146 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,033,382 + Rru_A1742 0.26 -0.6
2,033,382 + Rru_A1742 0.26 +0.4
2,033,382 + Rru_A1742 0.26 -1.7
2,033,383 - Rru_A1742 0.26 -0.2
2,033,383 - Rru_A1742 0.26 -1.7
2,033,383 - Rru_A1742 0.26 -0.2
2,033,715 + -1.0
2,033,716 - -0.8
2,033,716 - -2.9
2,033,716 - -2.6
2,033,778 - -2.1
2,033,787 - -0.8
2,033,787 - +1.2
2,033,787 - -2.1
2,033,809 + +0.2
2,033,810 - -1.2
2,037,495 + -2.2
2,037,496 - +0.3
2,038,146 - +1.8
2,038,146 - -1.6

Or see this region's nucleotide sequence