Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1727

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1726 and Rru_A1727 are separated by 4 nucleotidesRru_A1727 and Rru_A1728 are separated by 164 nucleotides Rru_A1726: Rru_A1726 - Transcription-repair coupling factor (NCBI), at 2,018,784 to 2,022,317 _A1726 Rru_A1727: Rru_A1727 - Protein of unknown function DUF339 (NCBI), at 2,022,322 to 2,022,588 _A1727 Rru_A1728: Rru_A1728 - ATP-dependent DNA helicase RecG (NCBI), at 2,022,753 to 2,024,864 _A1728 Position (kb) 2022 2023Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2021.329 kb on + strand, within Rru_A1726at 2021.329 kb on + strand, within Rru_A1726at 2021.329 kb on + strand, within Rru_A1726at 2021.329 kb on + strand, within Rru_A1726at 2021.485 kb on + strand, within Rru_A1726at 2021.486 kb on - strand, within Rru_A1726at 2021.486 kb on - strand, within Rru_A1726at 2021.486 kb on - strand, within Rru_A1726at 2021.499 kb on - strand, within Rru_A1726at 2021.572 kb on + strand, within Rru_A1726at 2021.572 kb on + strand, within Rru_A1726at 2021.572 kb on + strand, within Rru_A1726at 2021.572 kb on + strand, within Rru_A1726at 2021.573 kb on - strand, within Rru_A1726at 2021.573 kb on - strand, within Rru_A1726at 2021.796 kb on - strand, within Rru_A1726at 2021.822 kb on - strand, within Rru_A1726at 2021.857 kb on + strand, within Rru_A1726at 2021.857 kb on + strand, within Rru_A1726at 2021.858 kb on - strand, within Rru_A1726at 2022.088 kb on + strandat 2022.089 kb on - strandat 2022.089 kb on - strandat 2022.654 kb on + strandat 2022.654 kb on + strandat 2022.654 kb on + strandat 2022.654 kb on + strandat 2022.654 kb on + strandat 2022.654 kb on + strandat 2022.655 kb on - strandat 2022.655 kb on - strandat 2022.655 kb on - strandat 2022.656 kb on + strandat 2022.656 kb on + strandat 2022.656 kb on + strandat 2022.656 kb on + strandat 2022.657 kb on - strandat 2022.657 kb on - strandat 2022.657 kb on - strandat 2022.657 kb on - strandat 2022.657 kb on - strandat 2022.658 kb on + strandat 2022.658 kb on + strandat 2022.658 kb on + strandat 2022.658 kb on + strandat 2022.659 kb on - strandat 2022.659 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,021,329 + Rru_A1726 0.72 -2.1
2,021,329 + Rru_A1726 0.72 +1.8
2,021,329 + Rru_A1726 0.72 -0.8
2,021,329 + Rru_A1726 0.72 -1.9
2,021,485 + Rru_A1726 0.76 -1.4
2,021,486 - Rru_A1726 0.76 -3.1
2,021,486 - Rru_A1726 0.76 -1.8
2,021,486 - Rru_A1726 0.76 +0.3
2,021,499 - Rru_A1726 0.77 -1.0
2,021,572 + Rru_A1726 0.79 -0.2
2,021,572 + Rru_A1726 0.79 -4.4
2,021,572 + Rru_A1726 0.79 -1.9
2,021,572 + Rru_A1726 0.79 +0.2
2,021,573 - Rru_A1726 0.79 -0.2
2,021,573 - Rru_A1726 0.79 -0.2
2,021,796 - Rru_A1726 0.85 -2.4
2,021,822 - Rru_A1726 0.86 -2.5
2,021,857 + Rru_A1726 0.87 -2.5
2,021,857 + Rru_A1726 0.87 -3.6
2,021,858 - Rru_A1726 0.87 -0.2
2,022,088 + -2.6
2,022,089 - -0.8
2,022,089 - +1.8
2,022,654 + -4.4
2,022,654 + -1.4
2,022,654 + -1.9
2,022,654 + -3.5
2,022,654 + -0.4
2,022,654 + -0.2
2,022,655 - -1.9
2,022,655 - -1.7
2,022,655 - -1.4
2,022,656 + -3.0
2,022,656 + +1.8
2,022,656 + -2.9
2,022,656 + +0.2
2,022,657 - -0.8
2,022,657 - -1.2
2,022,657 - -1.7
2,022,657 - -1.2
2,022,657 - +1.8
2,022,658 + -3.2
2,022,658 + -0.5
2,022,658 + -1.2
2,022,658 + -2.4
2,022,659 - -1.2
2,022,659 - -1.1

Or see this region's nucleotide sequence