Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1702

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1701 and Rru_A1702 are separated by 96 nucleotidesRru_A1702 and Rru_A1703 overlap by 1 nucleotidesRru_A1703 and Rru_A1704 are separated by 22 nucleotides Rru_A1701: Rru_A1701 - Methionyl-tRNA synthetase, class Ia (NCBI), at 1,990,869 to 1,992,428 _A1701 Rru_A1702: Rru_A1702 - DNA-directed DNA polymerase (NCBI), at 1,992,525 to 1,993,649 _A1702 Rru_A1703: Rru_A1703 - Thymidylate kinase (NCBI), at 1,993,649 to 1,994,293 _A1703 Rru_A1704: Rru_A1704 - Serine-type D-Ala-D-Ala carboxypeptidase (NCBI), at 1,994,316 to 1,995,482 _A1704 Position (kb) 1992 1993 1994Strain fitness (log2 ratio) -1 0 1at 1992.473 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,992,473 + +0.8

Or see this region's nucleotide sequence