Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1681

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1680 and Rru_A1681 are separated by 31 nucleotidesRru_A1681 and Rru_A1682 are separated by 195 nucleotides Rru_A1680: Rru_A1680 - Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI), at 1,971,560 to 1,972,960 _A1680 Rru_A1681: Rru_A1681 - Potassium uptake protein (NCBI), at 1,972,992 to 1,974,368 _A1681 Rru_A1682: Rru_A1682 - Aminotransferase, class IV (NCBI), at 1,974,564 to 1,975,439 _A1682 Position (kb) 1972 1973 1974 1975Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1972.956 kb on + strandat 1972.976 kb on + strandat 1972.976 kb on + strandat 1973.229 kb on - strand, within Rru_A1681at 1974.376 kb on - strandat 1974.477 kb on + strandat 1974.477 kb on + strandat 1974.477 kb on + strandat 1974.477 kb on + strandat 1974.477 kb on + strandat 1974.478 kb on - strandat 1974.478 kb on - strandat 1974.478 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,972,956 + -3.7
1,972,976 + -0.1
1,972,976 + +3.8
1,973,229 - Rru_A1681 0.17 +1.8
1,974,376 - -0.7
1,974,477 + -0.2
1,974,477 + +0.4
1,974,477 + -0.5
1,974,477 + -1.4
1,974,477 + -1.0
1,974,478 - -0.8
1,974,478 - -2.1
1,974,478 - -1.7

Or see this region's nucleotide sequence