Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1679

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1678 and Rru_A1679 are separated by 6 nucleotidesRru_A1679 and Rru_A1680 overlap by 11 nucleotides Rru_A1678: Rru_A1678 - Nitrogen Metabolism Transcriptional Regulator, NtrC, Fis Family (NCBI), at 1,967,836 to 1,969,281 _A1678 Rru_A1679: Rru_A1679 - Multi-sensor Signal Transduction Histidine Kinase (NCBI), at 1,969,288 to 1,971,570 _A1679 Rru_A1680: Rru_A1680 - Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI), at 1,971,560 to 1,972,960 _A1680 Position (kb) 1969 1970 1971 1972Strain fitness (log2 ratio) -3 -2 -1 0 1at 1968.383 kb on - strand, within Rru_A1678at 1968.613 kb on + strand, within Rru_A1678at 1968.614 kb on - strand, within Rru_A1678at 1968.693 kb on + strand, within Rru_A1678at 1968.727 kb on + strand, within Rru_A1678at 1969.072 kb on + strand, within Rru_A1678at 1971.359 kb on - strandat 1971.359 kb on - strandat 1971.359 kb on - strandat 1971.359 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,968,383 - Rru_A1678 0.38 -1.2
1,968,613 + Rru_A1678 0.54 -1.2
1,968,614 - Rru_A1678 0.54 +0.2
1,968,693 + Rru_A1678 0.59 -2.7
1,968,727 + Rru_A1678 0.62 -3.2
1,969,072 + Rru_A1678 0.85 -0.2
1,971,359 - -2.3
1,971,359 - -0.8
1,971,359 - +0.2
1,971,359 - +1.0

Or see this region's nucleotide sequence