Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1668

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1667 and Rru_A1668 are separated by 205 nucleotidesRru_A1668 and Rru_A1669 are separated by 6 nucleotidesRru_A1669 and Rru_AR0032 are separated by 175 nucleotides Rru_A1667: Rru_A1667 - Beta-ketoacyl-acyl carrier protein synthase III (FabH) (NCBI), at 1,957,629 to 1,958,603 _A1667 Rru_A1668: Rru_A1668 - Integration host factor, alpha subunit (NCBI), at 1,958,809 to 1,959,126 _A1668 Rru_A1669: Rru_A1669 - Transcriptional Regulator, MerR family (NCBI), at 1,959,133 to 1,959,858 _A1669 Rru_AR0032: Rru_AR0032 - tRNA-Pro (NCBI), at 1,960,034 to 1,960,110 _AR0032 Position (kb) 1958 1959 1960Strain fitness (log2 ratio) -1 0 1 2 3at 1958.602 kb on - strandat 1958.657 kb on - strandat 1958.685 kb on - strandat 1958.722 kb on - strandat 1959.322 kb on + strand, within Rru_A1669at 1959.323 kb on - strand, within Rru_A1669at 1959.323 kb on - strand, within Rru_A1669at 1959.325 kb on + strand, within Rru_A1669at 1959.326 kb on - strand, within Rru_A1669at 1959.374 kb on - strand, within Rru_A1669at 1959.374 kb on - strand, within Rru_A1669at 1959.374 kb on - strand, within Rru_A1669at 1959.374 kb on - strand, within Rru_A1669at 1959.385 kb on + strand, within Rru_A1669at 1959.385 kb on + strand, within Rru_A1669at 1959.385 kb on + strand, within Rru_A1669at 1959.385 kb on + strand, within Rru_A1669at 1959.387 kb on + strand, within Rru_A1669at 1959.387 kb on + strand, within Rru_A1669at 1959.388 kb on - strand, within Rru_A1669at 1959.856 kb on + strandat 1959.857 kb on - strandat 1959.896 kb on + strandat 1960.126 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,958,602 - +0.0
1,958,657 - -0.2
1,958,685 - +2.2
1,958,722 - +2.7
1,959,322 + Rru_A1669 0.26 +0.2
1,959,323 - Rru_A1669 0.26 -1.7
1,959,323 - Rru_A1669 0.26 +0.2
1,959,325 + Rru_A1669 0.26 -1.7
1,959,326 - Rru_A1669 0.27 +3.4
1,959,374 - Rru_A1669 0.33 -0.0
1,959,374 - Rru_A1669 0.33 -0.8
1,959,374 - Rru_A1669 0.33 -0.6
1,959,374 - Rru_A1669 0.33 -1.2
1,959,385 + Rru_A1669 0.35 +0.2
1,959,385 + Rru_A1669 0.35 +0.3
1,959,385 + Rru_A1669 0.35 +1.8
1,959,385 + Rru_A1669 0.35 -0.0
1,959,387 + Rru_A1669 0.35 +2.2
1,959,387 + Rru_A1669 0.35 -0.2
1,959,388 - Rru_A1669 0.35 -1.0
1,959,856 + -1.2
1,959,857 - -0.8
1,959,896 + -1.6
1,960,126 + -1.1

Or see this region's nucleotide sequence