Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1667 and Rru_A1668 are separated by 205 nucleotides Rru_A1668 and Rru_A1669 are separated by 6 nucleotides Rru_A1669 and Rru_AR0032 are separated by 175 nucleotides
Rru_A1667: Rru_A1667 - Beta-ketoacyl-acyl carrier protein synthase III (FabH) (NCBI), at 1,957,629 to 1,958,603
_A1667
Rru_A1668: Rru_A1668 - Integration host factor, alpha subunit (NCBI), at 1,958,809 to 1,959,126
_A1668
Rru_A1669: Rru_A1669 - Transcriptional Regulator, MerR family (NCBI), at 1,959,133 to 1,959,858
_A1669
Rru_AR0032: Rru_AR0032 - tRNA-Pro (NCBI), at 1,960,034 to 1,960,110
_AR0032
Position (kb)
1958
1959
1960 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1958.602 kb on - strand at 1958.657 kb on - strand at 1958.685 kb on - strand at 1958.722 kb on - strand at 1959.322 kb on + strand, within Rru_A1669 at 1959.323 kb on - strand, within Rru_A1669 at 1959.323 kb on - strand, within Rru_A1669 at 1959.325 kb on + strand, within Rru_A1669 at 1959.326 kb on - strand, within Rru_A1669 at 1959.374 kb on - strand, within Rru_A1669 at 1959.374 kb on - strand, within Rru_A1669 at 1959.374 kb on - strand, within Rru_A1669 at 1959.374 kb on - strand, within Rru_A1669 at 1959.385 kb on + strand, within Rru_A1669 at 1959.385 kb on + strand, within Rru_A1669 at 1959.385 kb on + strand, within Rru_A1669 at 1959.385 kb on + strand, within Rru_A1669 at 1959.387 kb on + strand, within Rru_A1669 at 1959.387 kb on + strand, within Rru_A1669 at 1959.388 kb on - strand, within Rru_A1669 at 1959.856 kb on + strand at 1959.857 kb on - strand at 1959.896 kb on + strand at 1960.126 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 1,958,602 - +0.0 1,958,657 - -0.2 1,958,685 - +2.2 1,958,722 - +2.7 1,959,322 + Rru_A1669 0.26 +0.2 1,959,323 - Rru_A1669 0.26 -1.7 1,959,323 - Rru_A1669 0.26 +0.2 1,959,325 + Rru_A1669 0.26 -1.7 1,959,326 - Rru_A1669 0.27 +3.4 1,959,374 - Rru_A1669 0.33 -0.0 1,959,374 - Rru_A1669 0.33 -0.8 1,959,374 - Rru_A1669 0.33 -0.6 1,959,374 - Rru_A1669 0.33 -1.2 1,959,385 + Rru_A1669 0.35 +0.2 1,959,385 + Rru_A1669 0.35 +0.3 1,959,385 + Rru_A1669 0.35 +1.8 1,959,385 + Rru_A1669 0.35 -0.0 1,959,387 + Rru_A1669 0.35 +2.2 1,959,387 + Rru_A1669 0.35 -0.2 1,959,388 - Rru_A1669 0.35 -1.0 1,959,856 + -1.2 1,959,857 - -0.8 1,959,896 + -1.6 1,960,126 + -1.1
Or see this region's nucleotide sequence