Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1663 and Rru_A1664 are separated by 1 nucleotides Rru_A1664 and Rru_A1665 are separated by 109 nucleotides Rru_A1665 and Rru_A1666 are separated by 43 nucleotides
Rru_A1663: Rru_A1663 - Ubiquinol-cytochrome C chaperone (NCBI), at 1,954,958 to 1,955,566
_A1663
Rru_A1664: Rru_A1664 - conserved hypothetical cytosolic protein (NCBI), at 1,955,568 to 1,956,149
_A1664
Rru_A1665: Rru_A1665 - Ribosomal protein S32 (NCBI), at 1,956,259 to 1,956,444
_A1665
Rru_A1666: Rru_A1666 - Fatty acid synthesis plsX protein (NCBI), at 1,956,488 to 1,957,537
_A1666
Position (kb)
1956
1957 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1955.262 kb on - strand, within Rru_A1663 at 1955.263 kb on + strand, within Rru_A1663 at 1955.263 kb on + strand, within Rru_A1663 at 1955.263 kb on + strand, within Rru_A1663 at 1955.263 kb on + strand, within Rru_A1663 at 1955.263 kb on + strand, within Rru_A1663 at 1955.264 kb on - strand, within Rru_A1663 at 1955.264 kb on - strand, within Rru_A1663 at 1955.264 kb on - strand, within Rru_A1663 at 1955.264 kb on - strand, within Rru_A1663 at 1955.264 kb on - strand, within Rru_A1663 at 1955.303 kb on + strand, within Rru_A1663 at 1955.303 kb on + strand, within Rru_A1663 at 1955.303 kb on + strand, within Rru_A1663 at 1955.303 kb on + strand, within Rru_A1663 at 1955.304 kb on - strand, within Rru_A1663 at 1955.304 kb on - strand, within Rru_A1663 at 1955.321 kb on + strand, within Rru_A1663 at 1955.322 kb on - strand, within Rru_A1663 at 1955.322 kb on - strand, within Rru_A1663 at 1955.375 kb on + strand, within Rru_A1663 at 1955.375 kb on + strand, within Rru_A1663 at 1955.375 kb on + strand, within Rru_A1663 at 1955.423 kb on + strand, within Rru_A1663 at 1955.423 kb on + strand, within Rru_A1663 at 1955.423 kb on + strand, within Rru_A1663 at 1955.423 kb on + strand, within Rru_A1663 at 1955.423 kb on + strand, within Rru_A1663 at 1955.423 kb on + strand, within Rru_A1663 at 1955.424 kb on - strand, within Rru_A1663 at 1955.424 kb on - strand, within Rru_A1663 at 1955.424 kb on - strand, within Rru_A1663 at 1955.425 kb on + strand, within Rru_A1663 at 1955.425 kb on + strand, within Rru_A1663 at 1955.425 kb on + strand, within Rru_A1663 at 1955.426 kb on - strand, within Rru_A1663 at 1955.426 kb on - strand, within Rru_A1663 at 1955.426 kb on - strand, within Rru_A1663
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 1,955,262 - Rru_A1663 0.50 +0.8 1,955,263 + Rru_A1663 0.50 -3.0 1,955,263 + Rru_A1663 0.50 -2.7 1,955,263 + Rru_A1663 0.50 +2.2 1,955,263 + Rru_A1663 0.50 +0.8 1,955,263 + Rru_A1663 0.50 -0.8 1,955,264 - Rru_A1663 0.50 +0.1 1,955,264 - Rru_A1663 0.50 +1.8 1,955,264 - Rru_A1663 0.50 +3.5 1,955,264 - Rru_A1663 0.50 -2.6 1,955,264 - Rru_A1663 0.50 +0.1 1,955,303 + Rru_A1663 0.57 -0.6 1,955,303 + Rru_A1663 0.57 -2.9 1,955,303 + Rru_A1663 0.57 -3.1 1,955,303 + Rru_A1663 0.57 +1.0 1,955,304 - Rru_A1663 0.57 -2.6 1,955,304 - Rru_A1663 0.57 -0.3 1,955,321 + Rru_A1663 0.60 +0.3 1,955,322 - Rru_A1663 0.60 +0.7 1,955,322 - Rru_A1663 0.60 +2.1 1,955,375 + Rru_A1663 0.68 -0.3 1,955,375 + Rru_A1663 0.68 -2.3 1,955,375 + Rru_A1663 0.68 -3.2 1,955,423 + Rru_A1663 0.76 +0.2 1,955,423 + Rru_A1663 0.76 +1.8 1,955,423 + Rru_A1663 0.76 +2.0 1,955,423 + Rru_A1663 0.76 -1.4 1,955,423 + Rru_A1663 0.76 -1.2 1,955,423 + Rru_A1663 0.76 -1.0 1,955,424 - Rru_A1663 0.77 -2.6 1,955,424 - Rru_A1663 0.77 +0.8 1,955,424 - Rru_A1663 0.77 -2.5 1,955,425 + Rru_A1663 0.77 +1.8 1,955,425 + Rru_A1663 0.77 +0.6 1,955,425 + Rru_A1663 0.77 -0.8 1,955,426 - Rru_A1663 0.77 -1.6 1,955,426 - Rru_A1663 0.77 +1.3 1,955,426 - Rru_A1663 0.77 -1.4
Or see this region's nucleotide sequence