Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1647

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	carbon source anaerobic Succinic Acid 31.25 mM
1,934,194	+				+0.5
1,934,194	+				-1.1
1,934,583	+		Rru_A1646	0.73	+0.5
1,934,583	+		Rru_A1646	0.73	-2.4
1,934,583	+		Rru_A1646	0.73	+1.8
1,934,583	+		Rru_A1646	0.73	-0.1
1,934,583	+		Rru_A1646	0.73	+1.3
1,934,585	+		Rru_A1646	0.74	+0.4
1,934,628	+		Rru_A1646	0.88	-1.9
1,934,628	+		Rru_A1646	0.88	+1.3
1,934,661	+				+1.8
1,934,801	+				-0.5
1,934,801	+				-0.2
1,934,802	-				+0.9
1,934,802	-				+0.2
1,934,802	-				+1.3
1,934,802	-				-0.4
1,934,806	+				+0.2
1,934,822	+				+0.6
1,934,822	+				-2.7
1,934,822	+				+0.3
1,934,822	+				+1.8
1,934,823	-				-2.2
1,934,832	+				+1.8
1,934,832	+				-0.2
1,934,833	-				-0.8
1,934,867	+				-1.1
1,934,868	-				-1.2
1,934,868	-				-1.7
1,934,913	+				-0.6
1,934,933	+				-0.7
1,934,934	-				+2.2
1,934,979	-				-0.9
1,934,981	+				+2.0
1,934,981	+				-0.3
1,934,981	+				+1.8
1,934,981	+				-0.7
1,934,982	-				+1.8
1,934,982	-				-1.7
1,934,982	-				-1.6
1,934,986	-				-1.4
1,934,986	-				-1.7
1,934,986	-				+0.2
1,934,987	+				-0.5
1,934,987	+				+2.2
1,934,987	+				-0.1
1,934,988	-				+1.4
1,934,988	-				-1.2
1,934,988	-				-0.8
1,935,099	+				+1.9
1,935,099	+				-0.9
1,935,100	-				-0.2
1,935,408	-				+2.4
1,935,595	+				-1.7
1,935,598	+		Rru_A1647	0.10	-0.1
1,935,598	+		Rru_A1647	0.10	-1.4
1,935,598	+		Rru_A1647	0.10	-0.8
1,935,599	-		Rru_A1647	0.10	-0.9
1,935,599	-		Rru_A1647	0.10	+0.2
1,935,640	+		Rru_A1647	0.11	+0.8
1,935,640	+		Rru_A1647	0.11	+1.2
1,935,641	-		Rru_A1647	0.11	-1.8
1,935,642	+		Rru_A1647	0.11	-0.8
1,935,642	+		Rru_A1647	0.11	-0.6
1,935,642	+		Rru_A1647	0.11	-2.1
1,935,642	+		Rru_A1647	0.11	+0.2
1,935,642	+		Rru_A1647	0.11	+2.1
1,935,642	+		Rru_A1647	0.11	+1.2
1,935,642	+		Rru_A1647	0.11	-0.6
1,935,662	+		Rru_A1647	0.11	-3.7
1,935,662	+		Rru_A1647	0.11	+0.8
1,935,663	-		Rru_A1647	0.11	+1.1
1,935,663	-		Rru_A1647	0.11	-0.2
1,935,663	-		Rru_A1647	0.11	+0.6
1,935,663	-		Rru_A1647	0.11	+1.8
1,935,697	+		Rru_A1647	0.12	-1.2
1,935,697	+		Rru_A1647	0.12	-1.4
1,935,698	-		Rru_A1647	0.12	+0.3
1,935,731	-		Rru_A1647	0.13	+0.8
1,935,731	-		Rru_A1647	0.13	+0.9
1,935,774	+		Rru_A1647	0.14	+1.8
1,935,814	+		Rru_A1647	0.15	-2.0
1,935,814	+		Rru_A1647	0.15	+0.1
1,935,814	+		Rru_A1647	0.15	-0.6
1,935,814	+		Rru_A1647	0.15	+1.8
1,935,814	+		Rru_A1647	0.15	-1.2
1,935,815	-		Rru_A1647	0.15	-1.3
1,935,985	+		Rru_A1647	0.19	+0.8
1,936,145	+		Rru_A1647	0.22	-1.0
1,936,146	-		Rru_A1647	0.22	-0.2
1,936,146	-		Rru_A1647	0.22	-0.2
1,936,146	-		Rru_A1647	0.22	+2.1
1,936,190	+		Rru_A1647	0.23	+1.2
1,936,190	+		Rru_A1647	0.23	-0.9
1,936,245	+		Rru_A1647	0.24	+0.6
1,936,245	+		Rru_A1647	0.24	+1.8
1,936,245	+		Rru_A1647	0.24	-0.8
1,936,246	-		Rru_A1647	0.25	-0.4
1,936,246	-		Rru_A1647	0.25	+0.6
1,936,246	-		Rru_A1647	0.25	+0.0
1,936,277	-		Rru_A1647	0.25	+0.9
1,936,419	+		Rru_A1647	0.28	+0.1
1,936,420	-		Rru_A1647	0.28	+1.3
1,936,420	-		Rru_A1647	0.28	+4.8
1,936,420	-		Rru_A1647	0.28	+0.8
1,936,467	+		Rru_A1647	0.29	+0.7
1,936,467	+		Rru_A1647	0.29	-3.1
1,936,468	-		Rru_A1647	0.29	+1.9
1,936,593	+		Rru_A1647	0.32	+1.3
1,936,593	+		Rru_A1647	0.32	-1.8
1,936,593	+		Rru_A1647	0.32	+1.1
1,936,718	-		Rru_A1647	0.35	+2.8
1,936,718	-		Rru_A1647	0.35	-1.7
1,936,728	+		Rru_A1647	0.35	+1.8
1,936,728	+		Rru_A1647	0.35	+1.2
1,936,728	+		Rru_A1647	0.35	-0.9
1,936,728	+		Rru_A1647	0.35	-4.1
1,936,728	+		Rru_A1647	0.35	+3.0
1,936,728	+		Rru_A1647	0.35	-3.4
1,936,729	-		Rru_A1647	0.35	+0.4
1,936,729	-		Rru_A1647	0.35	+0.3
1,936,729	-		Rru_A1647	0.35	+0.8
1,936,729	-		Rru_A1647	0.35	+0.6
1,936,729	-		Rru_A1647	0.35	-0.2
1,936,729	-		Rru_A1647	0.35	+1.8
1,936,766	-		Rru_A1647	0.36	+1.9
1,936,860	+		Rru_A1647	0.38	+0.2
1,936,860	+		Rru_A1647	0.38	-1.1
1,937,088	+		Rru_A1647	0.43	-0.6
1,937,088	+		Rru_A1647	0.43	-3.4
1,937,088	+		Rru_A1647	0.43	+0.3
1,937,088	+		Rru_A1647	0.43	+1.4
1,937,088	+		Rru_A1647	0.43	+1.0
1,937,088	+		Rru_A1647	0.43	-0.3
1,937,088	+		Rru_A1647	0.43	-3.1
1,937,089	-		Rru_A1647	0.43	-0.4
1,937,089	-		Rru_A1647	0.43	-1.9
1,937,089	-		Rru_A1647	0.43	+2.8
1,937,089	-		Rru_A1647	0.43	+0.7
1,937,120	+		Rru_A1647	0.44	+2.7
1,937,120	+		Rru_A1647	0.44	+0.5
1,937,120	+		Rru_A1647	0.44	-1.4
1,937,121	-		Rru_A1647	0.44	+2.7
1,937,121	-		Rru_A1647	0.44	+0.8
1,937,121	-		Rru_A1647	0.44	-1.0
1,937,121	-		Rru_A1647	0.44	-1.3
1,937,151	-		Rru_A1647	0.45	-1.7
1,937,218	+		Rru_A1647	0.46	-0.5
1,937,218	+		Rru_A1647	0.46	+1.2
1,937,219	-		Rru_A1647	0.46	+3.0
1,937,219	-		Rru_A1647	0.46	+1.1
1,937,219	-		Rru_A1647	0.46	+0.0
1,937,219	-		Rru_A1647	0.46	-0.1
1,937,219	-		Rru_A1647	0.46	+2.6
1,937,219	-		Rru_A1647	0.46	-1.7
1,937,258	-		Rru_A1647	0.47	+1.8
1,937,278	-		Rru_A1647	0.48	+0.2
1,937,440	-		Rru_A1647	0.51	-3.0
1,937,582	+		Rru_A1647	0.54	-2.4
1,937,582	+		Rru_A1647	0.54	-1.0
1,937,582	+		Rru_A1647	0.54	+1.8
1,937,582	+		Rru_A1647	0.54	-1.7
1,937,583	-		Rru_A1647	0.54	-3.5
1,938,039	+		Rru_A1647	0.65	+0.8
1,938,040	-		Rru_A1647	0.65	-1.0
1,938,118	-		Rru_A1647	0.66	-0.8
1,938,198	+		Rru_A1647	0.68	+0.2
1,938,199	-		Rru_A1647	0.68	+1.3
1,938,199	-		Rru_A1647	0.68	-0.2
1,938,288	+		Rru_A1647	0.70	-0.6
1,938,289	-		Rru_A1647	0.70	+0.8
1,938,289	-		Rru_A1647	0.70	+0.3
1,938,328	-		Rru_A1647	0.71	+0.2
1,938,328	-		Rru_A1647	0.71	+1.8
1,938,328	-		Rru_A1647	0.71	-0.8
1,938,452	+		Rru_A1647	0.74	-2.3
1,938,452	+		Rru_A1647	0.74	-2.6
1,938,553	+		Rru_A1647	0.76	-2.9
1,938,553	+		Rru_A1647	0.76	-1.9
1,938,553	+		Rru_A1647	0.76	+4.6
1,938,554	-		Rru_A1647	0.76	-1.2
1,938,554	-		Rru_A1647	0.76	+1.1
1,938,766	+		Rru_A1647	0.81	+0.5
1,938,767	-		Rru_A1647	0.81	-0.9
1,938,866	+		Rru_A1647	0.83	-2.2
1,938,866	+		Rru_A1647	0.83	-1.0
1,938,867	-		Rru_A1647	0.83	+0.6
1,938,867	-		Rru_A1647	0.83	-1.8
1,938,867	-		Rru_A1647	0.83	+0.8
1,939,047	+		Rru_A1647	0.87	-3.0
1,939,047	+		Rru_A1647	0.87	-3.1
1,939,048	-		Rru_A1647	0.87	+2.1
1,939,071	-		Rru_A1647	0.88	+0.9
1,939,238	+				-1.7
1,939,286	-				+1.8
1,939,354	+				-0.0
1,939,414	-				-2.4
1,939,461	+				+0.2
1,939,461	+				+0.1
1,939,576	+				-3.0
1,939,639	-				+0.2
1,939,639	-				-2.7
1,939,651	+				+0.3
1,939,652	-				-0.2
1,939,652	-				-2.7
1,939,664	-				+1.5
1,939,741	+				+2.8
1,939,741	+				-1.8
1,939,742	-				+0.8
1,939,759	+				+1.9
1,939,759	+				-0.5
1,939,760	-				+2.5
1,939,760	-				-1.4
1,939,820	+				-1.0
1,939,820	+				-0.0
1,939,821	-				-0.8
1,939,821	-				-0.6
1,939,862	-				-1.8
1,939,875	-				-2.2
1,939,878	+				+1.3
1,939,943	+				-0.3
1,939,943	+				-2.6
1,939,943	+				-1.2
1,939,943	+				-0.7
1,939,944	-				-0.6
1,939,991	+				+1.6
1,939,997	-				-0.3
1,940,002	-				+0.2
1,940,016	+				-1.5
1,940,017	-				-0.8
1,940,304	+		Rru_A1648	0.74	-0.8
1,940,305	-		Rru_A1648	0.74	+0.7
1,940,523	-		Rru_A1649	0.19	+1.1
1,940,523	-		Rru_A1649	0.19	+0.4