Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1628

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1626 and Rru_A1627 are separated by 110 nucleotidesRru_A1627 and Rru_A1628 overlap by 1 nucleotidesRru_A1628 and Rru_A1629 are separated by 89 nucleotides Rru_A1626: Rru_A1626 - methyltransferase (NCBI), at 1,918,564 to 1,919,172 _A1626 Rru_A1627: Rru_A1627 - hypothetical protein (NCBI), at 1,919,283 to 1,919,618 _A1627 Rru_A1628: Rru_A1628 - hypothetical protein (NCBI), at 1,919,618 to 1,919,848 _A1628 Rru_A1629: Rru_A1629 - hypothetical protein (NCBI), at 1,919,938 to 1,921,839 _A1629 Position (kb) 1919 1920Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1918.899 kb on + strand, within Rru_A1626at 1918.900 kb on - strand, within Rru_A1626at 1918.900 kb on - strand, within Rru_A1626at 1919.041 kb on + strand, within Rru_A1626at 1919.041 kb on + strand, within Rru_A1626at 1919.222 kb on + strandat 1919.234 kb on - strandat 1919.377 kb on + strand, within Rru_A1627at 1919.378 kb on - strand, within Rru_A1627at 1919.378 kb on - strand, within Rru_A1627at 1919.378 kb on - strand, within Rru_A1627at 1920.093 kb on - strandat 1920.179 kb on + strand, within Rru_A1629at 1920.180 kb on - strand, within Rru_A1629at 1920.331 kb on + strand, within Rru_A1629at 1920.331 kb on + strand, within Rru_A1629at 1920.331 kb on + strand, within Rru_A1629at 1920.551 kb on + strand, within Rru_A1629at 1920.557 kb on - strand, within Rru_A1629at 1920.669 kb on + strand, within Rru_A1629

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,918,899 + Rru_A1626 0.55 -0.2
1,918,900 - Rru_A1626 0.55 +2.2
1,918,900 - Rru_A1626 0.55 -1.1
1,919,041 + Rru_A1626 0.78 -1.1
1,919,041 + Rru_A1626 0.78 +0.3
1,919,222 + +0.3
1,919,234 - -1.8
1,919,377 + Rru_A1627 0.28 -1.2
1,919,378 - Rru_A1627 0.28 -0.9
1,919,378 - Rru_A1627 0.28 +0.4
1,919,378 - Rru_A1627 0.28 +0.1
1,920,093 - -3.8
1,920,179 + Rru_A1629 0.13 -3.6
1,920,180 - Rru_A1629 0.13 -1.4
1,920,331 + Rru_A1629 0.21 -2.1
1,920,331 + Rru_A1629 0.21 +0.8
1,920,331 + Rru_A1629 0.21 +0.5
1,920,551 + Rru_A1629 0.32 -1.7
1,920,557 - Rru_A1629 0.33 -4.3
1,920,669 + Rru_A1629 0.38 -2.2

Or see this region's nucleotide sequence