Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1601

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1600 and Rru_A1601 are separated by 127 nucleotidesRru_A1601 and Rru_A1602 are separated by 178 nucleotides Rru_A1600: Rru_A1600 - Citrate synthase I (NCBI), at 1,884,670 to 1,885,971 _A1600 Rru_A1601: Rru_A1601 - Glutamyl-tRNA synthetase (NCBI), at 1,886,099 to 1,887,505 _A1601 Rru_A1602: Rru_A1602 - ComEC/Rec2-related protein (NCBI), at 1,887,684 to 1,889,903 _A1602 Position (kb) 1886 1887 1888Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1885.990 kb on - strandat 1885.990 kb on - strandat 1885.990 kb on - strandat 1885.990 kb on - strandat 1885.990 kb on - strandat 1886.001 kb on - strandat 1886.046 kb on - strandat 1886.046 kb on - strandat 1886.046 kb on - strandat 1886.098 kb on - strandat 1886.098 kb on - strandat 1886.100 kb on + strandat 1886.100 kb on + strandat 1886.101 kb on - strandat 1887.646 kb on - strandat 1887.646 kb on - strandat 1887.651 kb on - strandat 1887.651 kb on - strandat 1887.651 kb on - strandat 1887.651 kb on - strandat 1887.651 kb on - strandat 1887.651 kb on - strandat 1887.651 kb on - strandat 1887.651 kb on - strandat 1887.861 kb on + strandat 1887.862 kb on - strandat 1888.070 kb on - strand, within Rru_A1602at 1888.070 kb on - strand, within Rru_A1602at 1888.070 kb on - strand, within Rru_A1602at 1888.070 kb on - strand, within Rru_A1602

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,885,990 - +1.7
1,885,990 - -3.3
1,885,990 - +0.7
1,885,990 - -1.3
1,885,990 - -2.7
1,886,001 - +2.2
1,886,046 - +0.9
1,886,046 - -2.2
1,886,046 - -2.5
1,886,098 - -0.1
1,886,098 - -0.8
1,886,100 + +4.9
1,886,100 + +4.3
1,886,101 - -1.3
1,887,646 - -2.9
1,887,646 - +0.1
1,887,651 - +0.2
1,887,651 - +1.3
1,887,651 - -0.3
1,887,651 - -2.0
1,887,651 - +0.1
1,887,651 - -4.1
1,887,651 - -2.4
1,887,651 - -1.1
1,887,861 + +1.2
1,887,862 - -2.9
1,888,070 - Rru_A1602 0.17 -3.4
1,888,070 - Rru_A1602 0.17 -4.0
1,888,070 - Rru_A1602 0.17 -0.5
1,888,070 - Rru_A1602 0.17 -1.0

Or see this region's nucleotide sequence