Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1600

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1599 and Rru_A1600 are separated by 156 nucleotidesRru_A1600 and Rru_A1601 are separated by 127 nucleotides Rru_A1599: Rru_A1599 - Lipid-A-disaccharide synthase (NCBI), at 1,883,290 to 1,884,513 _A1599 Rru_A1600: Rru_A1600 - Citrate synthase I (NCBI), at 1,884,670 to 1,885,971 _A1600 Rru_A1601: Rru_A1601 - Glutamyl-tRNA synthetase (NCBI), at 1,886,099 to 1,887,505 _A1601 Position (kb) 1884 1885 1886Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1884.462 kb on - strandat 1884.518 kb on + strandat 1884.524 kb on + strandat 1884.577 kb on + strandat 1884.577 kb on + strandat 1884.577 kb on + strandat 1884.578 kb on - strandat 1885.990 kb on - strandat 1885.990 kb on - strandat 1885.990 kb on - strandat 1885.990 kb on - strandat 1885.990 kb on - strandat 1886.001 kb on - strandat 1886.046 kb on - strandat 1886.046 kb on - strandat 1886.046 kb on - strandat 1886.098 kb on - strandat 1886.098 kb on - strandat 1886.100 kb on + strandat 1886.100 kb on + strandat 1886.101 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,884,462 - +0.9
1,884,518 + -3.0
1,884,524 + +1.7
1,884,577 + -1.2
1,884,577 + -0.9
1,884,577 + -0.2
1,884,578 - +0.1
1,885,990 - +1.7
1,885,990 - -3.3
1,885,990 - +0.7
1,885,990 - -1.3
1,885,990 - -2.7
1,886,001 - +2.2
1,886,046 - +0.9
1,886,046 - -2.2
1,886,046 - -2.5
1,886,098 - -0.1
1,886,098 - -0.8
1,886,100 + +4.9
1,886,100 + +4.3
1,886,101 - -1.3

Or see this region's nucleotide sequence