Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1599

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1597 and Rru_A1598 are separated by 11 nucleotidesRru_A1598 and Rru_A1599 overlap by 4 nucleotidesRru_A1599 and Rru_A1600 are separated by 156 nucleotides Rru_A1597: Rru_A1597 - Acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase (NCBI), at 1,881,624 to 1,882,421 _A1597 Rru_A1598: Rru_A1598 - Protein of unknown function DUF1009 (NCBI), at 1,882,433 to 1,883,293 _A1598 Rru_A1599: Rru_A1599 - Lipid-A-disaccharide synthase (NCBI), at 1,883,290 to 1,884,513 _A1599 Rru_A1600: Rru_A1600 - Citrate synthase I (NCBI), at 1,884,670 to 1,885,971 _A1600 Position (kb) 1883 1884 1885Strain fitness (log2 ratio) -3 -2 -1 0 1at 1882.419 kb on + strandat 1883.326 kb on + strandat 1883.326 kb on + strandat 1884.462 kb on - strandat 1884.518 kb on + strandat 1884.524 kb on + strandat 1884.577 kb on + strandat 1884.577 kb on + strandat 1884.577 kb on + strandat 1884.578 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,882,419 + +1.7
1,883,326 + -0.1
1,883,326 + -1.6
1,884,462 - +0.9
1,884,518 + -3.0
1,884,524 + +1.7
1,884,577 + -1.2
1,884,577 + -0.9
1,884,577 + -0.2
1,884,578 - +0.1

Or see this region's nucleotide sequence