Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1598

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1596 and Rru_A1597 are separated by 30 nucleotidesRru_A1597 and Rru_A1598 are separated by 11 nucleotidesRru_A1598 and Rru_A1599 overlap by 4 nucleotides Rru_A1596: Rru_A1596 - Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ (NCBI), at 1,881,099 to 1,881,593 _A1596 Rru_A1597: Rru_A1597 - Acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase (NCBI), at 1,881,624 to 1,882,421 _A1597 Rru_A1598: Rru_A1598 - Protein of unknown function DUF1009 (NCBI), at 1,882,433 to 1,883,293 _A1598 Rru_A1599: Rru_A1599 - Lipid-A-disaccharide synthase (NCBI), at 1,883,290 to 1,884,513 _A1599 Position (kb) 1882 1883 1884Strain fitness (log2 ratio) -1 0 1at 1881.601 kb on + strandat 1882.419 kb on + strandat 1883.326 kb on + strandat 1883.326 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,881,601 + -0.7
1,882,419 + +1.7
1,883,326 + -0.1
1,883,326 + -1.6

Or see this region's nucleotide sequence