Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1587 and Rru_A1588 are separated by 182 nucleotides Rru_A1588 and Rru_A1589 are separated by 5 nucleotides Rru_A1589 and Rru_A1590 overlap by 1 nucleotides Rru_A1590 and Rru_A1591 are separated by 48 nucleotides
Rru_A1587: Rru_A1587 - elongation factor Ts (NCBI), at 1,871,368 to 1,872,297
_A1587
Rru_A1588: Rru_A1588 - Uridylate kinase (NCBI), at 1,872,480 to 1,873,232
_A1588
Rru_A1589: Rru_A1589 - Ribosome recycling factor (NCBI), at 1,873,238 to 1,873,813
_A1589
Rru_A1590: Rru_A1590 - Di-trans-poly-cis-decaprenylcistransferase (NCBI), at 1,873,813 to 1,874,547
_A1590
Rru_A1591: Rru_A1591 - Phosphatidate cytidylyltransferase (NCBI), at 1,874,596 to 1,875,402
_A1591
Position (kb)
1873
1874 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7 at 1872.295 kb on + strand at 1872.295 kb on + strand at 1872.295 kb on + strand at 1872.295 kb on + strand at 1872.296 kb on - strand at 1872.313 kb on - strand at 1872.353 kb on + strand at 1872.415 kb on - strand at 1874.543 kb on + strand at 1874.543 kb on + strand at 1874.545 kb on + strand at 1874.545 kb on + strand at 1874.545 kb on + strand at 1874.546 kb on - strand at 1874.546 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 1,872,295 + +6.8 1,872,295 + +0.4 1,872,295 + -0.3 1,872,295 + +6.5 1,872,296 - +6.3 1,872,313 - +3.3 1,872,353 + -1.3 1,872,415 - +0.1 1,874,543 + +3.5 1,874,543 + +1.1 1,874,545 + +0.8 1,874,545 + +1.7 1,874,545 + +0.7 1,874,546 - +1.0 1,874,546 - -3.1
Or see this region's nucleotide sequence