Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1587

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1586 and Rru_A1587 are separated by 215 nucleotidesRru_A1587 and Rru_A1588 are separated by 182 nucleotidesRru_A1588 and Rru_A1589 are separated by 5 nucleotides Rru_A1586: Rru_A1586 - Ribosomal protein S2 (NCBI), at 1,870,364 to 1,871,152 _A1586 Rru_A1587: Rru_A1587 - elongation factor Ts (NCBI), at 1,871,368 to 1,872,297 _A1587 Rru_A1588: Rru_A1588 - Uridylate kinase (NCBI), at 1,872,480 to 1,873,232 _A1588 Rru_A1589: Rru_A1589 - Ribosome recycling factor (NCBI), at 1,873,238 to 1,873,813 _A1589 Position (kb) 1871 1872 1873Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7at 1872.295 kb on + strandat 1872.295 kb on + strandat 1872.295 kb on + strandat 1872.295 kb on + strandat 1872.296 kb on - strandat 1872.313 kb on - strandat 1872.353 kb on + strandat 1872.415 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,872,295 + +6.8
1,872,295 + +0.4
1,872,295 + -0.3
1,872,295 + +6.5
1,872,296 - +6.3
1,872,313 - +3.3
1,872,353 + -1.3
1,872,415 - +0.1

Or see this region's nucleotide sequence