Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1586

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1585 and Rru_A1586 are separated by 189 nucleotidesRru_A1586 and Rru_A1587 are separated by 215 nucleotides Rru_A1585: Rru_A1585 - putative depolymerase (NCBI), at 1,869,086 to 1,870,174 _A1585 Rru_A1586: Rru_A1586 - Ribosomal protein S2 (NCBI), at 1,870,364 to 1,871,152 _A1586 Rru_A1587: Rru_A1587 - elongation factor Ts (NCBI), at 1,871,368 to 1,872,297 _A1587 Position (kb) 1870 1871 1872Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1869.476 kb on + strand, within Rru_A1585at 1869.476 kb on + strand, within Rru_A1585at 1869.476 kb on + strand, within Rru_A1585at 1869.476 kb on + strand, within Rru_A1585at 1869.476 kb on + strand, within Rru_A1585at 1869.476 kb on + strand, within Rru_A1585at 1869.477 kb on - strand, within Rru_A1585at 1869.477 kb on - strand, within Rru_A1585at 1869.726 kb on - strand, within Rru_A1585at 1869.794 kb on + strand, within Rru_A1585at 1869.794 kb on + strand, within Rru_A1585at 1869.794 kb on + strand, within Rru_A1585at 1869.794 kb on + strand, within Rru_A1585at 1869.794 kb on + strand, within Rru_A1585at 1869.795 kb on - strand, within Rru_A1585at 1869.795 kb on - strand, within Rru_A1585at 1869.795 kb on - strand, within Rru_A1585at 1869.795 kb on - strand, within Rru_A1585at 1869.798 kb on + strand, within Rru_A1585at 1869.798 kb on + strand, within Rru_A1585at 1869.799 kb on - strand, within Rru_A1585at 1869.799 kb on - strand, within Rru_A1585at 1869.848 kb on + strand, within Rru_A1585at 1869.848 kb on + strand, within Rru_A1585at 1869.849 kb on - strand, within Rru_A1585at 1869.965 kb on + strand, within Rru_A1585at 1869.965 kb on + strand, within Rru_A1585at 1869.966 kb on - strand, within Rru_A1585at 1869.966 kb on - strand, within Rru_A1585at 1869.966 kb on - strand, within Rru_A1585at 1869.966 kb on - strand, within Rru_A1585at 1869.966 kb on - strand, within Rru_A1585at 1869.967 kb on + strand, within Rru_A1585at 1869.967 kb on + strand, within Rru_A1585at 1870.004 kb on + strand, within Rru_A1585at 1870.004 kb on + strand, within Rru_A1585at 1870.004 kb on + strand, within Rru_A1585at 1870.004 kb on + strand, within Rru_A1585at 1870.004 kb on + strand, within Rru_A1585

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,869,476 + Rru_A1585 0.36 +1.0
1,869,476 + Rru_A1585 0.36 -0.3
1,869,476 + Rru_A1585 0.36 +1.9
1,869,476 + Rru_A1585 0.36 +0.3
1,869,476 + Rru_A1585 0.36 +0.6
1,869,476 + Rru_A1585 0.36 -1.7
1,869,477 - Rru_A1585 0.36 +2.8
1,869,477 - Rru_A1585 0.36 -2.7
1,869,726 - Rru_A1585 0.59 -0.9
1,869,794 + Rru_A1585 0.65 -1.6
1,869,794 + Rru_A1585 0.65 -2.2
1,869,794 + Rru_A1585 0.65 -2.4
1,869,794 + Rru_A1585 0.65 -3.3
1,869,794 + Rru_A1585 0.65 -3.4
1,869,795 - Rru_A1585 0.65 +1.7
1,869,795 - Rru_A1585 0.65 -1.2
1,869,795 - Rru_A1585 0.65 -0.0
1,869,795 - Rru_A1585 0.65 +0.4
1,869,798 + Rru_A1585 0.65 -0.3
1,869,798 + Rru_A1585 0.65 -0.6
1,869,799 - Rru_A1585 0.65 -1.1
1,869,799 - Rru_A1585 0.65 -0.6
1,869,848 + Rru_A1585 0.70 -1.1
1,869,848 + Rru_A1585 0.70 +0.1
1,869,849 - Rru_A1585 0.70 -0.9
1,869,965 + Rru_A1585 0.81 +0.4
1,869,965 + Rru_A1585 0.81 +2.1
1,869,966 - Rru_A1585 0.81 +0.1
1,869,966 - Rru_A1585 0.81 +0.6
1,869,966 - Rru_A1585 0.81 -0.3
1,869,966 - Rru_A1585 0.81 -1.7
1,869,966 - Rru_A1585 0.81 +0.1
1,869,967 + Rru_A1585 0.81 -1.7
1,869,967 + Rru_A1585 0.81 +1.5
1,870,004 + Rru_A1585 0.84 +0.2
1,870,004 + Rru_A1585 0.84 +1.7
1,870,004 + Rru_A1585 0.84 -4.9
1,870,004 + Rru_A1585 0.84 +1.0
1,870,004 + Rru_A1585 0.84 +0.6

Or see this region's nucleotide sequence