Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1585 and Rru_A1586 are separated by 189 nucleotides Rru_A1586 and Rru_A1587 are separated by 215 nucleotides
Rru_A1585: Rru_A1585 - putative depolymerase (NCBI), at 1,869,086 to 1,870,174
_A1585
Rru_A1586: Rru_A1586 - Ribosomal protein S2 (NCBI), at 1,870,364 to 1,871,152
_A1586
Rru_A1587: Rru_A1587 - elongation factor Ts (NCBI), at 1,871,368 to 1,872,297
_A1587
Position (kb)
1870
1871
1872 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 1869.476 kb on + strand, within Rru_A1585 at 1869.476 kb on + strand, within Rru_A1585 at 1869.476 kb on + strand, within Rru_A1585 at 1869.476 kb on + strand, within Rru_A1585 at 1869.476 kb on + strand, within Rru_A1585 at 1869.476 kb on + strand, within Rru_A1585 at 1869.477 kb on - strand, within Rru_A1585 at 1869.477 kb on - strand, within Rru_A1585 at 1869.726 kb on - strand, within Rru_A1585 at 1869.794 kb on + strand, within Rru_A1585 at 1869.794 kb on + strand, within Rru_A1585 at 1869.794 kb on + strand, within Rru_A1585 at 1869.794 kb on + strand, within Rru_A1585 at 1869.794 kb on + strand, within Rru_A1585 at 1869.795 kb on - strand, within Rru_A1585 at 1869.795 kb on - strand, within Rru_A1585 at 1869.795 kb on - strand, within Rru_A1585 at 1869.795 kb on - strand, within Rru_A1585 at 1869.798 kb on + strand, within Rru_A1585 at 1869.798 kb on + strand, within Rru_A1585 at 1869.799 kb on - strand, within Rru_A1585 at 1869.799 kb on - strand, within Rru_A1585 at 1869.848 kb on + strand, within Rru_A1585 at 1869.848 kb on + strand, within Rru_A1585 at 1869.849 kb on - strand, within Rru_A1585 at 1869.965 kb on + strand, within Rru_A1585 at 1869.965 kb on + strand, within Rru_A1585 at 1869.966 kb on - strand, within Rru_A1585 at 1869.966 kb on - strand, within Rru_A1585 at 1869.966 kb on - strand, within Rru_A1585 at 1869.966 kb on - strand, within Rru_A1585 at 1869.966 kb on - strand, within Rru_A1585 at 1869.967 kb on + strand, within Rru_A1585 at 1869.967 kb on + strand, within Rru_A1585 at 1870.004 kb on + strand, within Rru_A1585 at 1870.004 kb on + strand, within Rru_A1585 at 1870.004 kb on + strand, within Rru_A1585 at 1870.004 kb on + strand, within Rru_A1585 at 1870.004 kb on + strand, within Rru_A1585
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 1,869,476 + Rru_A1585 0.36 +1.0 1,869,476 + Rru_A1585 0.36 -0.3 1,869,476 + Rru_A1585 0.36 +1.9 1,869,476 + Rru_A1585 0.36 +0.3 1,869,476 + Rru_A1585 0.36 +0.6 1,869,476 + Rru_A1585 0.36 -1.7 1,869,477 - Rru_A1585 0.36 +2.8 1,869,477 - Rru_A1585 0.36 -2.7 1,869,726 - Rru_A1585 0.59 -0.9 1,869,794 + Rru_A1585 0.65 -1.6 1,869,794 + Rru_A1585 0.65 -2.2 1,869,794 + Rru_A1585 0.65 -2.4 1,869,794 + Rru_A1585 0.65 -3.3 1,869,794 + Rru_A1585 0.65 -3.4 1,869,795 - Rru_A1585 0.65 +1.7 1,869,795 - Rru_A1585 0.65 -1.2 1,869,795 - Rru_A1585 0.65 -0.0 1,869,795 - Rru_A1585 0.65 +0.4 1,869,798 + Rru_A1585 0.65 -0.3 1,869,798 + Rru_A1585 0.65 -0.6 1,869,799 - Rru_A1585 0.65 -1.1 1,869,799 - Rru_A1585 0.65 -0.6 1,869,848 + Rru_A1585 0.70 -1.1 1,869,848 + Rru_A1585 0.70 +0.1 1,869,849 - Rru_A1585 0.70 -0.9 1,869,965 + Rru_A1585 0.81 +0.4 1,869,965 + Rru_A1585 0.81 +2.1 1,869,966 - Rru_A1585 0.81 +0.1 1,869,966 - Rru_A1585 0.81 +0.6 1,869,966 - Rru_A1585 0.81 -0.3 1,869,966 - Rru_A1585 0.81 -1.7 1,869,966 - Rru_A1585 0.81 +0.1 1,869,967 + Rru_A1585 0.81 -1.7 1,869,967 + Rru_A1585 0.81 +1.5 1,870,004 + Rru_A1585 0.84 +0.2 1,870,004 + Rru_A1585 0.84 +1.7 1,870,004 + Rru_A1585 0.84 -4.9 1,870,004 + Rru_A1585 0.84 +1.0 1,870,004 + Rru_A1585 0.84 +0.6
Or see this region's nucleotide sequence