Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1568 and Rru_A1569 are separated by 52 nucleotides Rru_A1569 and Rru_A1570 are separated by 119 nucleotides Rru_A1570 and Rru_A1571 are separated by 60 nucleotides
Rru_A1568: Rru_A1568 - Proton-translocating NADH-quinone oxidoreductase, chain N (NCBI), at 1,849,045 to 1,850,508
_A1568
Rru_A1569: Rru_A1569 - Biotin--acetyl-CoA-carboxylase ligase (NCBI), at 1,850,561 to 1,851,340
_A1569
Rru_A1570: Rru_A1570 - Putative transcriptional acitvator, Baf (NCBI), at 1,851,460 to 1,852,233
_A1570
Rru_A1571: Rru_A1571 - metallo-beta-lactamase (NCBI), at 1,852,294 to 1,853,976
_A1571
Position (kb)
1851
1852
1853 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1852.269 kb on + strand at 1852.270 kb on - strand at 1852.293 kb on + strand at 1852.346 kb on - strand at 1852.346 kb on - strand at 1852.346 kb on - strand at 1852.396 kb on + strand at 1852.410 kb on + strand at 1852.570 kb on + strand, within Rru_A1571 at 1852.583 kb on - strand, within Rru_A1571 at 1852.583 kb on - strand, within Rru_A1571 at 1852.583 kb on - strand, within Rru_A1571 at 1852.583 kb on - strand, within Rru_A1571 at 1852.914 kb on + strand, within Rru_A1571 at 1853.200 kb on + strand, within Rru_A1571 at 1853.200 kb on + strand, within Rru_A1571 at 1853.201 kb on - strand, within Rru_A1571 at 1853.201 kb on - strand, within Rru_A1571
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 1,852,269 + -3.2 1,852,270 - +0.7 1,852,293 + -3.9 1,852,346 - -1.6 1,852,346 - -1.3 1,852,346 - -1.4 1,852,396 + +0.7 1,852,410 + -0.9 1,852,570 + Rru_A1571 0.16 -1.3 1,852,583 - Rru_A1571 0.17 +1.7 1,852,583 - Rru_A1571 0.17 -0.3 1,852,583 - Rru_A1571 0.17 -0.3 1,852,583 - Rru_A1571 0.17 +2.0 1,852,914 + Rru_A1571 0.37 +0.1 1,853,200 + Rru_A1571 0.54 -1.3 1,853,200 + Rru_A1571 0.54 +0.7 1,853,201 - Rru_A1571 0.54 -0.6 1,853,201 - Rru_A1571 0.54 -2.5
Or see this region's nucleotide sequence