Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1569

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1568 and Rru_A1569 are separated by 52 nucleotidesRru_A1569 and Rru_A1570 are separated by 119 nucleotidesRru_A1570 and Rru_A1571 are separated by 60 nucleotides Rru_A1568: Rru_A1568 - Proton-translocating NADH-quinone oxidoreductase, chain N (NCBI), at 1,849,045 to 1,850,508 _A1568 Rru_A1569: Rru_A1569 - Biotin--acetyl-CoA-carboxylase ligase (NCBI), at 1,850,561 to 1,851,340 _A1569 Rru_A1570: Rru_A1570 - Putative transcriptional acitvator, Baf (NCBI), at 1,851,460 to 1,852,233 _A1570 Rru_A1571: Rru_A1571 - metallo-beta-lactamase (NCBI), at 1,852,294 to 1,853,976 _A1571 Position (kb) 1850 1851 1852Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1852.269 kb on + strandat 1852.270 kb on - strandat 1852.293 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,852,269 + -3.2
1,852,270 - +0.7
1,852,293 + -3.9

Or see this region's nucleotide sequence