Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1560

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1558 and Rru_A1559 overlap by 4 nucleotidesRru_A1559 and Rru_A1560 overlap by 1 nucleotidesRru_A1560 and Rru_A1561 are separated by 24 nucleotides Rru_A1558: Rru_A1558 - NADH dehydrogenase I, D subunit (NCBI), at 1,837,792 to 1,838,970 _A1558 Rru_A1559: Rru_A1559 - NADH dehydrogenase (ubiquinone) (NCBI), at 1,838,967 to 1,839,593 _A1559 Rru_A1560: Rru_A1560 - NADH-quinone oxidoreductase, F subunit (NCBI), at 1,839,593 to 1,840,882 _A1560 Rru_A1561: Rru_A1561 - NADH-quinone oxidoreductase, chain G (NCBI), at 1,840,907 to 1,842,976 _A1561 Position (kb) 1839 1840 1841Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1840.880 kb on + strandat 1840.880 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,840,880 + +4.1
1,840,880 + -3.7

Or see this region's nucleotide sequence