Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1556

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1555 and Rru_A1556 overlap by 10 nucleotidesRru_A1556 and Rru_A1557 are separated by 37 nucleotidesRru_A1557 and Rru_A1558 overlap by 1 nucleotides Rru_A1555: Rru_A1555 - NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 (NCBI), at 1,836,200 to 1,836,565 _A1555 Rru_A1556: Rru_A1556 - NADH dehydrogenase (ubiquinone), 20 kDa subunit (NCBI), at 1,836,556 to 1,837,113 _A1556 Rru_A1557: Rru_A1557 - NADH (or F420H2) dehydrogenase, subunit C (NCBI), at 1,837,151 to 1,837,792 _A1557 Rru_A1558: Rru_A1558 - NADH dehydrogenase I, D subunit (NCBI), at 1,837,792 to 1,838,970 _A1558 Position (kb) 1836 1837 1838Strain fitness (log2 ratio) -2 -1 0 1at 1835.592 kb on + strandat 1835.593 kb on - strandat 1835.709 kb on + strandat 1835.709 kb on + strandat 1835.709 kb on + strandat 1835.847 kb on + strandat 1835.848 kb on - strandat 1835.970 kb on - strandat 1836.111 kb on + strandat 1837.130 kb on + strandat 1837.130 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,835,592 + +1.7
1,835,593 - -0.1
1,835,709 + -2.1
1,835,709 + +1.7
1,835,709 + -0.2
1,835,847 + -1.3
1,835,848 - -0.7
1,835,970 - +0.5
1,836,111 + -0.6
1,837,130 + -0.3
1,837,130 + -1.1

Or see this region's nucleotide sequence